Sp. Nov., Isolated from a Soil of Cactus and the Reclassification of Wink Et Al 2003 as a Later Heterotypic Synonym of Horan and Brodsky 1982

Henssen A (1957) Morphology and system of thermophilic actinomycetes. Arch Mikrobiol 126:373–414

Article  Google Scholar 

Tamura T, Ishida Y, Nozawa Y, Otoguro M, Suzuki K-I (2009) Transfer of Actinomadura spadix Nonomura and Ohara 1971 to Actinoallomurus spadix gen. nov., comb. nov., and description of Actinoallomurus amamiensis sp. nov., Actinoallomurus caesius sp. nov., Actinoallomurus coprocola sp. nov., Actinoallomurus fulvus sp. nov., Actinoallomurus iriomotensis sp. nov., Actinoallomurus luridus sp. nov., Actinoallomurus purpureus sp. nov. and Actinoallomurus yoronensis sp. nov. Int J Syst Evol Microbiol 59:1867–1874. https://doi.org/10.1099/ijs.0.006858-0

Article  PubMed  Google Scholar 

Iinuma S, Yokota A, Hasegawa T, Kanamaru T (1994) Actinocorallia gen. nov., a new genus of the order actinomycetales. Int J Syst Bacteriol 44:230–234. https://doi.org/10.1099/00207713-44-2-230

Article  CAS  Google Scholar 

Lechevalier HA, Lechevalier MP (1970) A critical evaluation of the genera of aerobic actinomycetes. In: Prauser H (ed) The Actinomycetales. Gustav Fischer Verlag, Jena, pp 395–405

Google Scholar 

Couch NJ (1963) Some new genera and species of the Actinoplanaceae. J Elisha Mitchell Sci Soc 79:53–70

Google Scholar 

Parte AC, Sardà Carbasse J, Meier-Kolthoff JP, Reimer LC, Göker M (2020) List of prokaryotic names with standing in nomenclature (LPSN) moves to the DSMZ. Int J Syst Evol Microbiol 70:5607–5612. https://doi.org/10.1099/ijsem.0.004332

Article  PubMed  PubMed Central  Google Scholar 

Trujillo ME, Goodfellow M (2012) Genus Actinomadura (Lechevalier and Lechevalier 1970) emend. Kroppenstedt, Goodfellow and Stackebrandt 1990. In: Goodfellow M, Kämpfer P, Hussse H-J, Trujilo M, Suzuki K-I, Ludwig W, William WB (eds) Bergy’s manual of systematic bacteriology (vol 5). Springer, New York, pp 1940–1959

Google Scholar 

Salam N, Jiao J-Y, Zhang X-T, Li W-J (2020) Update on the classification of higher ranks in the phylum Actinobacteria. Int J Syst Evol Microbiol 70:1331–1355. https://doi.org/10.1099/ijsem.0.003920

Article  PubMed  CAS  Google Scholar 

Dalmastri C, Gastaldo L, Berini F, Marinelli F, Marcone GL (2020) Description of the bacterial RNA polymerase inhibitor GE23077-producer Actinomadura sp. NRRL B-65521T as Actinomadura lepetitiana sp. nov. Int J Syst Evol Microbiol 70:4782–4790. https://doi.org/10.1099/ijsem.0.004348

Article  PubMed  CAS  Google Scholar 

Ay H (2021) Genomic insight into a novel actinobacterium, Actinomadura rubrisoli sp. nov., reveals high potential for bioactive metabolites. Antonie Van Leeuwenhoek 114:195–208. https://doi.org/10.1007/s10482-020-01511-5

Article  PubMed  CAS  Google Scholar 

Kanchanasin P, Phongsopitanun W, Yuki M, Kudo T, Ohkuma M et al (2021) Actinomadura violacea sp. nov., a madurastatin A1-producing strain isolated from lichen in Thailand. Int J Syst Evol Microbiol 71:5126. https://doi.org/10.1099/ijsem.0.005126

Article  CAS  Google Scholar 

Tarantini FS, Brunati M, Taravella A, Carrano L, Parenti F et al (2021) Actinomadura graeca sp. nov.: a novel producer of the macrocyclic antibiotic zelkovamycin. PLoS ONE 16:e0260413. https://doi.org/10.1371/journal.pone.0260413

Article  PubMed  PubMed Central  CAS  Google Scholar 

Lee SD, Yang HL, Kim IS, Choe H, Kim J-S (2023) Actinomadura terrae sp. nov. and Actinomadura litoris OS3-89, isolated from rhizosphere soil of cactus. Int J Syst Evol Microbiol 73:005687. https://doi.org/10.1099/ijsem.0.005687

Article  CAS  Google Scholar 

Kämpfer P (2012) Genus Streptomyces (Waksman and Henrici) emend. Witt and Stackebrandt emend. Wellington, Stackebrandt, Sanders, Wolstrup and Jorgensen 1992. In: Goodfellow M, Kämpfer P, Hussse H-J, Trujilo M, Suzuki K-I, Ludwig W, William WB (eds) Bergy’s Manual of Systematic Bacteriology (vol 5). Springer, New York, pp 1455–1804

Google Scholar 

Küster E, Williams S (1964) Selection of media for isolation of Streptomycetes. Nature 202:928–929. https://doi.org/10.1038/202928a0

Article  Google Scholar 

Shirling EB, Gottlieb D (1966) Methods for characterization of Streptomyces species. Int J Syst Bacteriol 16:313–340. https://doi.org/10.1099/00207713-16-3-313

Article  Google Scholar 

Hopwood DA, Bibb MJ, Chater KF, Kieser T, Bruton CJ et al (1985) Genetic manipulation of streptomyces: a laboratory manual. John Innes Foundation, Norwich

Google Scholar 

Yoon SH, Ha SM, Kwon S, Lim J, Kim Y et al (2017) Introducing EzBioCloud: a taxonomically united database of 16S rRNA and whole genome assemblies. Int J Syst Evol Microbiol 67:1613–1617

Article  PubMed  PubMed Central  CAS  Google Scholar 

Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The clustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 24:4876–4882. https://doi.org/10.1093/nar/25.24.4876

Article  Google Scholar 

Jukes TH, Cantor CR (1969) Evolution of protein molecules. In: Munro HN (ed) Mammalian protein metabolism. Academic Press, New York, pp 21–132

Chapter  Google Scholar 

Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783–791. https://doi.org/10.2307/2408678

Article  PubMed  Google Scholar 

Parks DH, Imelfort M, Skennerton CT, Hugenholtz P, Tyson GW (2014) Assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes. Genome Res 25:1043–1055. https://doi.org/10.1101/gr.186072.114

Article  CAS  Google Scholar 

Na SI, Kim YO, Yoon SH, Ha SM, Baek I et al (2018) UBCG: up-to-date bacterial core gene set and pipeline for phylogenomic tree reconstruction. J Microbiol 56:280–285. https://doi.org/10.1007/s12275-018-8014-6

Article  PubMed  CAS  Google Scholar 

Yoon S-H, Ha S-M, Lim J, Kwon S, Chun J (2017) A large-scale evaluation of algorithms to calculate average nucleotide identity. Antonie Van Leeuwenhoek 110:1281–1286. https://doi.org/10.1007/s10482-017-0844-4

Article  PubMed  CAS  Google Scholar 

Meier-Kolthoff JP, Auch AF, Klenk H-P, Göker M (2013) Genome sequence-based species delimitation with confidence intervals and improved distance functions. BMC Bioinformatics 14:60. https://doi.org/10.1186/1471-2105-14-60

Article  PubMed  PubMed Central  Google Scholar 

Prauser H, Bergholz M (1974) Taxonomy of actinomycetes and screening for antibiotic substances. Postepy Hig Med Dosw 128:441–457

Google Scholar 

MacFaddin JF (1980) Biochemical tests for identification of medical bacteria, 2nd edn. Williams and Wilkins, Baltimore

Google Scholar 

Gordon RE, Barnett DA, Handerhan JE, Pang CH-N (1974) Nocardia coeliaca, Nocardia autotrophica, and the nocardin strain. Int J Syst Bacteriol 24:54–63. https://doi.org/10.1099/00207713-24-1-54

Article  Google Scholar 

Minnikin DE, O’Donnell AG, Goodfellow M, Alderson G, Athalye M et al (1984) An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2:233–241. https://doi.org/10.1016/0167-7012(84)90018-6

Article  CAS  Google Scholar 

Minnikin DE, Patel PV, Alshamaony L, Goodfellow M (1977) Polar lipid composition in the classification of Nocardia and related bacteria. Int J Syst Bacteriol 27:104–107. https://doi.org/10.1099/00207713-27-2-104

Article  CAS  Google Scholar 

Kroppenstedt RM (1985) Fatty acid and menaquinone analysis of actinomycetes and related organisms. In: Goodfellow M, Minnikin DE (eds) Chemical methods in bacterial systematics. Academic Press, London, pp 173–199

Google Scholar 

Minnikin DE, Hutchinson IG, Caldicott AB, Goodfellow M (1980) Thin layer chromatography of methanolysates of mycolic acid-containing bacteria. J Chromatogr 188:221–233. https://doi.org/10.1016/S0021-9673(00)88433-2

Article  CAS  Google Scholar 

Staneck JL, Roberts GD (1974) Simplified approach to identification of aerobic actinomycetes by thin-layer chromatography. Appl Microbiol 28:226–231. https://doi.org/10.1128/am.28.2.226-231.1974

Article  PubMed  PubMed Central  CAS  Google Scholar 

Uchida K, Aida K (1977) Acyl type of bacterial cell walls: its simple identification by a colorimetric method. J Gen Appl Microbiol 23:249–260. https://doi.org/10.2323/jgam.23.249

Article  CAS  Google Scholar 

Saddler GS, Tavecchia P, Lociuro S, Zanol M, Colombo E et al (1991) Analysis of madurose and other actinomycete whole cell sugars by gas chromatography. J Microbiol Methods 14:185–191. https://doi.org/10.1016/0167-7012(91)90022-I

Article  CAS  Google Scholar 

Chun J, Oren A, Ventosa A, Christensen H, Arahal DR et al (2018) Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes. Int J Syst Evol Microbiol 68:461–466. https://doi.org/10.1099/ijsem.0.002516

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