Raw sequence data supporting the findings of this study are available at the FAANG data portal (https://data.faang.org), with the following BioProject accession codes: WGS data (PRJEB58030), RNA-seq data (PRJEB58031), WGBS data (PRJEB42772) and ATAC-seq data (PRJEB44468). The BayesR and BayesRCπ models are available as part of the open-source BayesRCO package, available at https://github.com/FAANG/BayesRCO. Source code to reproduce the analyses and manuscript figures and full results from the GSEA of PigQTLdb traits among BayesR and BayesRCO eQTLs are available at https://github.com/andreamrau/2025_BayesRCO_eQTL, with associated raw data available at https://doi.org/10.5281/zenodo.14973198.

© 2025 The Authors. Published by Elsevier Inc.