In this work, the impact of outliers on the performance of machine learning and deep learning models is investigated, specifically for the case of histopathological images of colorectal cancer stained with Haematoxylin and Eosin. The evaluation of the impact is done through the systematic comparison of one machine learning model (Random Forests) and one deep learning model (ResNet-18). Both models were trained with the popular NCT-CRC-HE-VAL-100K dataset and tested on the CRC-HE-VAL-7K companion set. Then, a curation process was performed by analysing the divergence of patches based on chromatic, textural and topological features of the training set and removing outliers to repeat the training with a cleaned dataset. The results showed that machine learning models, can benefit more from improvements in the quality of data, than deep learning models. Further, the results suggest that deep learning models are more robust to outliers as, through the training process, the architectures can learn features other than those previously mentioned.
Competing Interest StatementThe authors have declared no competing interest.
Funding StatementThis study did not receive any funding
Author DeclarationsI confirm all relevant ethical guidelines have been followed, and any necessary IRB and/or ethics committee approvals have been obtained.
Yes
The details of the IRB/oversight body that provided approval or exemption for the research described are given below:
The study used (or will use) ONLY openly available human data that were originally located at: https://zenodo.org/records/1214456 The datasets were publicly released in an anonymized and preprocessed form, and no additional de-identification was required prior to their use in this study.
I confirm that all necessary patient/participant consent has been obtained and the appropriate institutional forms have been archived, and that any patient/participant/sample identifiers included were not known to anyone (e.g., hospital staff, patients or participants themselves) outside the research group so cannot be used to identify individuals.
Yes
I understand that all clinical trials and any other prospective interventional studies must be registered with an ICMJE-approved registry, such as ClinicalTrials.gov. I confirm that any such study reported in the manuscript has been registered and the trial registration ID is provided (note: if posting a prospective study registered retrospectively, please provide a statement in the trial ID field explaining why the study was not registered in advance).
Yes
I have followed all appropriate research reporting guidelines, such as any relevant EQUATOR Network research reporting checklist(s) and other pertinent material, if applicable.
Yes
Data AvailabilityAll data produced in the present study are available upon reasonable request to the authors.
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