Galván, I., Garcia-Campa, J., and Negro, J.J., Complex plumage patterns can be produced only with the contribution of melanins, Physiol. Biochem. Zool., 2017, vol. 90, no. 5, pp. 600-604. https://doi.org/10.1086/693962
Galván, I. and Rodríguez-Martínez, S., A negative association between melanin-based plumage color heterogeneity and intensity in birds, Physiol. Biochem. Zool., 2019, vol. 92, no. 3, pp. 266-273. https://doi.org/10.1086/702720
Hirobe, T., Kawa, Y., Mizoguchi, M., et al., Effects of genic substitution at the pink-eyed dilution locus on the proliferation and differentiation of mouse epidermal melanocytes in vivo and in vitro, J. Exp. Zool., 2002, vol. 292, pp. 351-366.
Rosemblat, S., Sviderskaya, E.V., Easty, D.J., et al., Melanosomal defects in melanocytes from mice lacking expression of the pink-eyed dilution gene: correction by culture in the presence of excess tyrosine, Exp. Cell Res., 1998, vol. 239, no. 2, pp. 344-352. https://doi.org/10.1006/excr.1997.3901
Article CAS PubMed Google Scholar
Liu, X., Zhou, R., Peng, Y., et al., Feather follicles transcriptome profiles in Bashang long-tailed chickens with different plumage colors, Genes Genomics, 2019, vol. 41, no. 11, pp. 1357-1367. https://doi.org/10.1007/s13258-018-0740-y
Article CAS PubMed Google Scholar
Abolins-Abols, M., Kornobis, E., Ribeca, P., et al., Differential gene regulation underlies variation in melanic plumage coloration in the dark-eyed junco (Junco hyemalis), Mol. Ecol., 2018, vol. 27, no. 22, pp. 4501-4515. https://doi.org/10.1111/mec.14878
Article CAS PubMed Google Scholar
Poelstra, J.W., Vijay, N., Hoeppner, M.P., and Wolf, J.B., Transcriptomics of colour patterning and coloration shifts in crows, Mol. Ecol., 2015, vol. 24, no. 18, pp. 4617-4628. https://doi.org/10.1111/mec.13353
Article CAS PubMed Google Scholar
Bellono, N.W., Escobar, I.E., Lefkovith, A.J., et al., An intracellular anion channel critical for pigmentation, eLife, 2014, vol. 3, p. e04543. https://doi.org/10.7554/eLife.04543
Article PubMed PubMed Central Google Scholar
Puri, N., Gardner, J.M., and Brilliant, M.H., Aberrant pH of melanosomes in pink-eyed dilution (p) mutant melanocytes, J. Invest. Dermatol., 2000, vol. 115, no. 4, pp. 607-613. https://doi.org/10.1046/j.1523-1747.2000.00108.x
Article CAS PubMed Google Scholar
Sturm, R.A. and Frudakis, T.N., Eye colour: portals into pigmentation genes and ancestry, Trends Genet., 2004, vol. 20, no. 8, pp. 327-332. https://doi.org/10.1016/j.tig.2004.06.010
Article CAS PubMed Google Scholar
Walsh, S., Liu, F., Wollstein, A., et al., The HIrisPlex system for simultaneous prediction of hair and eye colour from DNA, Forensic Sci. Int.: Genet., 2013, vol. 7, no. 1, pp. 98-115. https://doi.org/10.1016/j.fsigen.2012.07.005
Article CAS PubMed Google Scholar
Zhu, G., Evans, D.M., Duffy, D.L., et al., A genome scan for eye color in 502 twin families: most variation is due to a QTL on chromosome 15q, Twin Res., 2004, vol. 2, pp. 197-210.
Duffy, D.L., Montgomery, G.W., Chen, W., et al., A three–single–nucleotide polymorphism haplotype in intron 1 of OCA2 explains most human eye-color variation, Am. J. Hum. Genet., 2007, vol. 80, pp. 241-252. https://doi.org/10.1086/510885
Article CAS PubMed Google Scholar
Orlow, S.J. and Brilliant, M.H., The pinkeyed dilution locus controls the biogenesis of melanosomes and levels of melanosomal proteins in the eye, Exp. Eye Res., 1999, vol. 68, pp. 147-154. https://doi.org/10.1006/exer.1998.0599
Article CAS PubMed Google Scholar
Caduff, M., Bauer, A., Jagannathan, V., and Leeb, T., OCA2 splice site variant in German Spitz dogs with oculocutaneous albinism, PLoS One, 2017, vol. 12, no. 10, p. e185944. https://doi.org/10.1371/journal.pone.0185944
Rosemblat, S., Sviderskaya, E.V., Easty, D.J., et al., Melanosomal defects in melanocytes from mice lacking expression of the pink-eyed dilution gene: correction by culture in the presence of excess tyrosine, Exp. Cell Res., 1998, vol. 239, pp. 344-352. https://doi.org/10.1006/excr.1997.3901
Article CAS PubMed Google Scholar
Brilliant, M.H., The mouse p (pink-eyed dilution) and human P genes, oculocutaneous albinism type 2 (OCA2), and melanosomal pH, Pigment. Cell Res., 2001, vol. 14, pp. 86-93. https://doi.org/10.1034/j.1600-0749.2001.140203.x
Article CAS PubMed Google Scholar
Lopes, R.J., Johnson, J.D., Toomey, M.B., et al., Genetic basis for red coloration in birds, Curr. Biol., 2016, vol. 26, no. 11, pp. 1427-1434. https://doi.org/10.1016/j.cub.2016.03.076
Article CAS PubMed PubMed Central Google Scholar
Toews, D.P., Taylor, S.A., Vallender, R., et al., Plumage genes and little else distinguish the genomes of hybridizing warblers, Curr. Biol., 2016, vol. 26, no. 17, pp. 2313-2318. https://doi.org/10.1016/j.cub.2016.06.034
Article CAS PubMed Google Scholar
Corbett, E.C., Brumfield, R.T., and Faircloth, B.C., The mechanistic, genetic and evolutionary causes of bird eye colour variation, Ibis, 2024, vol. 166. pp. 560-589. https://doi.org/10.1111/ibi.13276
Maniatis, T., Fritsch, E.F., and Sambrook, J., Molecular Cloning: A Laboratory Manual, Cold Spring Harbor: Cold Spring Harbor Lab., 1982.
Bonfield, J.K., Smith, K.F., and Staden, R., A new DNA sequence assembly program, Nucleic Acids Res., 1995, vol. 23, pp. 4992-4999.
CAS PubMed PubMed Central Google Scholar
Kumar, S., Stecher, G., and Tamura, K., MEGA7: Molecular Evolutionary Genetics Analysis version 7.0 for bigger datasets, Mol. Biol. Evol., 2016, vol. 33, no. 7, pp. 1870-1874. https://doi.org/10.1093/molbev/msw054
Article CAS PubMed PubMed Central Google Scholar
Nei, M., Molecular Evolutionary Genetics, New York: Columbia Univ. Press, 1987.
Librado, P. and Rozas, J., DnaSP v5: a software for comprehensive analysis of DNA polymorphism data, Bioinformatics, 2009, vol. 25, pp. 1451-1452.
Posada, D. and Crandall, K.A., Modeltest: testing the model of DNA substitution, Bioinformatics, 1998, vol. 14, no. 9, pp. 817-818.
Tamura, K., Nei, M., and Kumar, S., Prospects for inferring very large phylogenies by using the neighbor-joining method, Proc. Natl. Acad. Sci. U.S.A., 2004, vol. 101, pp. 11030-11035. https://doi.org/10.1073/pnas.0404206101
Article CAS PubMed PubMed Central Google Scholar
Waterhouse, A., Bertoni, M., Bienert, S., et al., SWISS-MODEL: homology modelling of protein structures and complexes, Nucleic Acids Res., 2018, vol. 46, pp. W296-W303. https://doi.org/10.1093/nar/gky427
Article CAS PubMed PubMed Central Google Scholar
Ronquist, F., Teslenko, M., van der Mark, P., et al., MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space, Syst. Biol., 2012, vol. 61, no. 3, pp. 539-542. https://doi.org/10.1093/sysbio/sys029
Article PubMed PubMed Central Google Scholar
Felsenstein, J., Confidence limits on phylogenies: an approach using the bootstrap, Evolution, 1985, vol. 39, no. 4, pp. 783-791. https://doi.org/10.1111/j.1558-5646.1985.tb00420.x
Rambaut, A., Drummond, A.J., Xie, D., et al., Posterior summarisation in Bayesian phylogenetics using Tracer 1.7, Syst. Biol., 2018, vol. 67, no. 5, pp. 901-904. https://doi.org/10.1093/sysbio/syy032
Comments (0)