Wright, N.A., Gregory, T.R., and Witt, C.C., Metabolic ‘engines’ of flight drive genome size reduction in birds, Proc. R. Soc., B, 2014, vol. 281, no. 1779, p. 20132780. https://doi.org/10.1098/rspb.2013.2780

Tiersch, T.R. and Wachtel, S.S., On the evolution of genome size of birds, J. Hered., 1991, vol. 82, no. 5, pp. 363—368. https://doi.org/10.1093/oxfordjournals.jhered.a111105

Article  CAS  PubMed  Google Scholar 

Gregory, T.R., Nicol, J.A., Tamm, H., et al., Eukaryotic genome size databases, Nucleic Acids Res., 2007, vol. 35, suppl. 1, pp. 332—338. https://doi.org/10.1093/nar/gkl828

Article  Google Scholar 

Kapusta, A., Suh, A., and Feschotte, C., Dynamics of genome size evolution in birds and mammals, Proc. Natl. Acad. Sci., U. S. A., 2017, vol. 114, no. 8, pp. E1460—E1469. https://doi.org/10.1073/pnas.1616702114

Article  CAS  PubMed  PubMed Central  Google Scholar 

Yu, J.P., Liu, W., Mai, C.L., et al., Genome size variation is associated with life-history traits in birds, J. Zool., 2020, vol. 310, no. 4, pp. 255—260. https://doi.org/10.1111/jzo.12755

Article  Google Scholar 

Organ, C.L., Shedlock, A.M., Meade, A., et al., Origin of avian genome size and structure in non-avian dinosaurs, Nature, 2007, vol. 446, no. 7132, pp. 180—184. https://doi.org/10.1038/nature05621

Article  CAS  PubMed  Google Scholar 

Feng, S., Stiller, J., Deng, Y., et al., Dense sampling of bird diversity increases power of comparative genomics, Nature, 2020, vol. 587, no. 7833, pp. 252—257. https://doi.org/10.1038/s41586-020-2873-9

Article  CAS  PubMed  PubMed Central  Google Scholar 

Bachmann, K., Harrington, B.A., and Craig, J.P., Genome size in birds, Chromosoma, 1972, vol. 37, no. 4, pp. 405—416. https://doi.org/10.1007/BF00284889

Article  CAS  Google Scholar 

Novák, P., Neumann, P., Pech, J., et al., RepeatExplorer: a Galaxy-based web server for genome-wide characterization of eukaryotic repetitive elements from next-generation sequence reads, Bioinformatics, 2013, vol. 29, no. 6, pp. 792—793. https://doi.org/10.1093/bioinformatics/btt054

Article  CAS  PubMed  Google Scholar 

Afgan, E., Baker, D., Batut, B., et al., The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update, Nucleic Acids Res., 2018, vol. 46, no. W1, pp. W537—W544. https://doi.org/10.1093/nar/gky379

Article  CAS  PubMed  PubMed Central  Google Scholar 

Liu, B., Shi, Y., Yuan, J., et al., Estimation of genomic characteristics by analyzing k-mer frequency in de novo genome projects, Quant. Biol., 2013, vol. 35, pp. 62—67. https://doi.org/10.48550/arXiv.1308.2012

Article  Google Scholar 

Al-Qurainy, F., Khan, S., Nadeem, M., et al., Estimation of genome size in the endemic species Reseda pentagyna and the locally rare species Reseda lutea using comparative analyses of flow cytometry and k-mer approaches, Plants, 2021, vol. 10, no. 7, p. 10071362. https://doi.org/10.3390/plants10071362

Article  CAS  Google Scholar 

Pflug, J.M., Holmes, V.R., Burrus, C., et al., Measuring genome sizes using read-depth, k-mers, and flow cytometry: methodological comparisons in beetles (Coleoptera), Genes, Genomes, Genet., 2020, vol. 10, no. 9, pp. 3047—3060. https://doi.org/10.1534/g3.120.401028

Article  CAS  Google Scholar 

Williams, D., Trimble, W. L., Shilts, M., et al., Rapid quantification of sequence repeats to resolve the size, structure and contents of bacterial genomes, BMC Genomics, 2013, vol. 14, no. 1, p. 537. https://doi.org/10.1186/1471-2164-14-537

Article  PubMed  PubMed Central  Google Scholar 

Vurture, G.W., Sedlazeck, F.J., Nattestad, M., et al., GenomeScope: fast reference-free genome profiling from short reads, Bioinformatics, 2017, vol. 33, no. 14, pp. 2202—2204. https://doi.org/10.1093/bioinformatics/btx153

Article  CAS  PubMed  PubMed Central  Google Scholar 

Rhie, A., Walenz, B.P., Koren, S., and Philippy, A.M., Merqury: reference-free quality, completeness, and phasing assessment for genome assemblies, Genome Biol., 2020, vol. 21, no. 1, pp. 1—27. https://doi.org/10.1186/s13059-020-02134-9

Article  CAS  Google Scholar 

Zhang, G., Li, C., Li, Q., et al., Comparative genomics reveals insights into avian genome evolution and adaptation, Science, 2014, vol. 346, no. 6215, pp. 1311—1320. https://doi.org/10.1126/science.1251385

Article  CAS  PubMed  PubMed Central  Google Scholar 

Chalopin, D., Naville, M., Plard, F., et al., Comparative analysis of transposable elements highlights mobilome diversity and evolution in vertebrates, Genome Biol. Evol., 2015, vol. 7, no. 2, pp. 567—580. https://doi.org/10.1093/gbe/evv005

Article  CAS  PubMed  PubMed Central  Google Scholar 

Kriegs, J.O., Matzke, A., Churakov, G., et al., Waves of genomic hitchhikers shed light on the evolution of gamebirds (Aves: Galliformes), BMC Evol. Biol., 2007, vol. 7, no. 1, pp. 1—11. https://doi.org/10.1186/1471-2148-7-190

Article  CAS  Google Scholar