Adibah AB, Adamson EA, Juliana LH, Nor Mohd SA, Wei-Jen C, Man A, Md DN (2018) DNA barcoding of Malaysian commercial snapper reveals an unrecognized species of the yellow-lined Lutjanus (Pisces: Lutjanidae). PLoS ONE 13(9):e0202945
Akib NAM, Tam BM, Phumee P, Abidin MZ, Tamadoni S, Mather PB, Nor SAM (2015) High connectivity in Rastrelliger kanagurta: influence of historical signatures and migratory behaviour inferred from mtDNA cytochrome b. PLoS ONE 10(3):e0119749
Article PubMed PubMed Central Google Scholar
Alam MM, Westfall KM, Pálsson S (2017) Historical demography and genetic differentiation of the giant freshwater prawn Macrobrachium rosenbergii in Bangladesh based on mitochondrial and dd RAD sequence variation. Ecol Evol 7(12):4326–4335
Article PubMed PubMed Central Google Scholar
Aljanabi SM, Martinez I (1997) Universal and rapid salt-extraction of high quality genomic DNA for PCR-based techniques. Nucleic Acids Res 25(22):4692–4693
Article CAS PubMed PubMed Central Google Scholar
Allen GR (1985) FAO species catalogue: vol. 6. Snappers of the world: an annotated and illustrated catalogue of Lutjanid species known to date (No. 6)
Allio R, Donega S, Galtier N, Nabholz B (2017) Large variation in the ratio of mitochondrial to nuclear mutation rate across animals: implications for genetic diversity and the use of mitochondrial DNA as a molecular marker. Mol Biol Evol 34(11):2762–2772
Article CAS PubMed Google Scholar
Avise JC, Arnold J, Ball RM, Bermingham E, Lamb T, Neigel JE, Reeb CA, Saunders NC (1987) Intraspecific phylogeography: the mitochondrial DNA bridge between population genetics and systematics. Annu Rev Ecol Syst 18(1):489–522
Baker CS, Perry A, Bannister JL, Weinrich MT, Abernethy RB, Calambokidis J, Lien J, Lambertsen RH, Ramirez JU, Vasquez O (1993) Abundant mitochondrial DNA variation and world-wide population structure in humpback whales. Proc Natl Acad Sci 90(17):8239–8243
Bland JM, Altman DG (1995) Multiple significance tests: the Bonferroni method. BMJ 310(6973):170
Article CAS PubMed PubMed Central Google Scholar
Bond G, Showers W, Cheseby M, Lotti R, Almasi P, DeMenocal P, Priore P, Cullen H, Hajdas I, Bonani G (1997) A pervasive millennial-scale cycle in North Atlantic Holocene and glacial climates. Science 278(5341):1257–1266
Bouckaert R, Vaughan TG, Barido-Sottani J, Duchêne S, Fourment M, Gavryushkina A, Heled J, Jones G, Kühnert D, De Maio N, Matschiner M (2019) BEAST 2.5: an advanced software platform for bayesian evolutionary analysis. PLoS Comput Biol 15(4):e1006650
Article CAS PubMed PubMed Central Google Scholar
Bowen BW, Bass AL, Rocha LA, Grant WS, Robertson DR (2001) Phylogeography of the trumpet fishes (Aulostomus): ring species complex on a global scale. Evolution 55(5):1029–1039
Article CAS PubMed Google Scholar
Chanthran SSD, Lim PE, Li Y, Liao TY, Poong SW, Du J, Hussein MAS, Sade A, Rumpet R, Loh KH (2020) Genetic diversity and population structure of Terapon jarbua (Forskål, 1775) (Teleostei, Terapontidae) in Malaysian waters. ZooKeys 911:139
Delrieu-Trottin E, Mona S, Maynard J, Neglia V, Veuille M, Planes S (2017) Population expansions dominate demographic histories of endemic and widespread Pacific reef fishes. Sci Rep 7(1):40519
Article CAS PubMed PubMed Central Google Scholar
Department of Fisheries (DOF) Malaysia (2023) Annual Fisheries Statistics 2022. http://www.dof.gov.my/en/fishery-statistics. Accessed on 12 April 2024
Dohna TA, Timm J, Hamid L, Kochzius M (2015) Limited connectivity and a phylogeographic break characterize populations of the pink anemone fish, Amphiprion perideraion, in the Indo-Malay Archipelago: inferences from a mitochondrial and microsatellite loci. Ecol Evol 5(8):1717–1733
Article PubMed PubMed Central Google Scholar
Donaldson KA, Wilson JRR (1999) Amphi-panamic geminates of snook (Percoidei: Centropomidae) provide a calibration of the divergence rate in the mitochondrial DNA control region of fishes. Mol Phylogenet Evol 13(1):208–213
Article CAS PubMed Google Scholar
Excoffier L, Lischer HE (2010) Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Mol Ecol Resour 10(3):564–567
Fan KL (1982) A study of water masses in Taiwan Strait. Acta Oceanogr Taiwan 13:140–153
Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39(4):783–791
Fratini S, Ragionieri L, Deli T, Harrer A, Marino IA, Cannicci S, Zane L, Schubart CD (2016) Unravelling population genetic structure with mitochondrial DNA in a notional panmictic coastal crab species: sample size makes the difference. BMC Evol Biol 16:1–15
Froese R, Pauly D (2023) FishBase World Wide Web electronic publication version (10/2023). www.fishbase.org
Fu YX (1997) Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics 147(2):915–925
Article CAS PubMed PubMed Central Google Scholar
Gaggiotti OE, Bekkevold D, Jørgensen HB, Foll M, Carvalho GR, Andre C, Ruzzante DE (2009) Disentangling the effects of evolutionary, demographic, and environmental factors influencing genetic structure of natural populations: Atlantic herring as a case study. Evolution 63(11):2939–2951
Garber AF, Tringali MD, Stuck KC (2004) Population structure and variation in red snapper (Lutjanus campechanus) from the Gulf of Mexico and Atlantic coast of Florida as determined from mitochondrial DNA control region sequence. Mar Biotechnol 6:175–185
Gomes G, Sampaio I, Schneider H (2012) Population structure of Lutjanus purpureus (Lutjanidae-Perciformes) on the Brazilian coast: further existence evidence of a single species of red snapper in the Western Atlantic. An Acad Bras Cienc 84:979–999
Gonzalez F, Barria P, Ponce F, Mora S (2023) Population genetic structure of marine fishes. https://doi.org/10.5772/intechopen.112694
Gopalakrishnan A, Vineesh N, Ismail S, Menon M, Akhilesh KV, Jeena NS, Paulton MP, Vijayagopal P (2018) Mitochondrial signatures revealed panmixia in Lutjanus argentimaculatus (Forsskål 1775). J Genet 97:179–187
Article CAS PubMed Google Scholar
Grant WAS, Bowen BW (1998) Shallow population histories in deep evolutionary lineages of marine fishes: insights from sardines and anchovies and lessons for conservation. J Hered 89(5):415–426
Gu S, Wang R, Li C, Li J, Shen Y (2020) Genetic diversity and population structure of the Chinese lake gudgeon (Sarcocheilichthys sinensis) using microsatellite markers. Aquac Fish 5(2):80–85
Guindon S, Dufayard JF, Lefort V, Anisimova M, Hordijk W, Gascuel O (2010) New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst Biol 59(3):307–321
Article CAS PubMed Google Scholar
Guo Y, Wang Z, Liu C, Liu L, Liu Y (2007) Phylogenetic relationships of South China Sea snappers (genus Lutjanus; family Lutjanidae) based on mitochondrial DNA sequences. Mar Biotechnol 9:682–688
Ha TTT, Nga TT, Hang TNA, Alam MS (2020) Genetic diversity in Pangasius spp. collected in Bangladesh based on mitochondrial cytochrome b gene sequence analysis. Aquac Rep 17:100351
Habib A, Sulaiman Z (2016) High genetic connectivity of narrow-barred Spanish mackerel (Scomberomorus commerson) from the South China, Bali and Java Seas. Zool Ecol 26(2):93–99
Habib A, Sulaiman Z (2017) Mitochondrial DNA analyses of narrow-barred Spanish mackerel (Scomberomorus commerson) sampled from the Arabian Sea, the Bay of Bengal, and the Indo-Malay Archipelago. Zool Ecol 27(3–4):245–250
Halim LJ, Rahim I, Mahboob S, Al-Ghanim KA, Asmiaty AMAT, Naim DM (2022) Phylogenetic relationships of the commercial red snapper (Lutjanidae sp.) from three marine regions. J King Saud Univ Sci 34(2):101756
Hasegawa M, Kishino H, Yano TA (1985) Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. J Mol Evol 22:160–174
Article CAS PubMed Google Scholar
Hernández-Álvarez C, Bayona-Vásquez NJ, Domínguez-Domínguez O, Uribe-Alcocer M, Díaz-Jaimes P (2020) Phylogeography of the Pacific red snapper (Lutjanus peru) and spotted rose snapper (Lutjanus guttatus) in the inshore tropical eastern Pacific. Copeia 108(1):61–71
Hewitt G (2000) The genetic legacy of the quaternary ice ages. Nature 405(6789):907–913
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