Fang, X., Mou, Y., Huang, Z., et al., The sequence and analysis of a Chinese pig genome, Gigascience, 2012, vol. 1, p. 16. https://doi.org/10.1186/2047-217X-1-16

Article  CAS  PubMed  PubMed Central  Google Scholar 

Yang, S., Chen, D., Xie, L., et al., Developmental dynamics of the single nucleus regulatory landscape of pig hippocampus, Sci. China Life Sci., 2023, vol. 66, no. 11, pp. 2614–2628. https://doi.org/10.1007/s11427-022-2345-2

Article  CAS  PubMed  Google Scholar 

Chung, H.C., Nguyen, V.G., Moon, H.J., et al., Regulation of porcine endogenous retrovirus by dual LTR1+2 (Long Terminal Region) miRNA in primary porcine kidney cells, J. Vet. Sci., 2019, vol. 20, p. e50. https://doi.org/10.4142/jvs.2019.20.e50

Article  PubMed  PubMed Central  Google Scholar 

Guo, Y., Zhao, J., Xu, Q., et al., Identification of functional single nucleotide polymorphisms in the porcine SLC6A4 gene associated with aggressive behavior in weaned pigs after mixing, J. Anim. Sci., 2022, vol. 100, no. 5, p. skac131. https://doi.org/10.1093/jas/skac131

Yang, H., Zhang, C., Chao, X., et al., A functional single nucleotide polymorphism in the 3' untranslated region of the porcine JARID2 gene is associated with aggressive behavior of weaned pigs after mixing, Int. J. Mol. Sci., 2023, vol. 25, no. 1, p. 27. https://doi.org/10.3390/ijms25010027

Article  CAS  PubMed  PubMed Central  Google Scholar 

Svoboda, M., Hodkovicova, N., Siwicki, A., and Szweda, W., The importance of slaughterhouses in monitoring the occurrence of tail biting in pigs—review, Vet. Med. (Praha), 2023, vol. 68, no. 9, pp. 349–358. https://doi.org/10.17221/85/2023-VETMED

De Silva, A.N., Araujo, M.S., Pertille, F., et al., How epigenetics can enhance pig welfare, Animals, 2022, vol. 12, pp. 32–49. https://doi.org/10.3390/ani12010032

Article  Google Scholar 

Ursinus, W.W., van Reenen, C.G., Reimert, I., and Bolhuis, J.E., Tail biting in pigs: blood serotonin and fearfulness as pieces of the puzzle, PLoS One, 2014, vol. 9, p. e107040. https://doi.org/10.1371/journal.pone.0107040

Article  CAS  PubMed  PubMed Central  Google Scholar 

Song, X., Beck, C.R., Du, R., et al., Predicting human genes susceptible to genomic instability associated with Alu/Alu-mediated rearrangements, Genome Res., 2018, vol. 28, no. 8, pp. 1228–1242. https://doi.org/10.1101/gr.229401.117

Article  CAS  PubMed  PubMed Central  Google Scholar 

Wurtz, K., Camerlink, I., D’Eath, R.B., et al., Recording behavior of indoor-housed farm animals automatically using machine vision technology: a systematic review, PLoS One, 2019, vol. 14, p. e226669. https://doi.org/10.1371/journal.pone.0226669

Article  CAS  Google Scholar 

Ji, H., Teng, G., Yu, J., et al., Efficient aggressive behavior recognition of pigs based on temporal shift module, Animals, 2023, vol. 13, p. 2078. https://doi.org/10.3390/ani13132078

Article  PubMed  PubMed Central  Google Scholar 

Scheffler, K., Stamer, E., Traulsen, I., and Krieter, J., Estimation of genetic parameters for agonistic behaviour of pigs at different ages, J. Agric. Sci. (Cambridge), 2016, vol. 154, pp. 732–741. https://doi.org/10.1017/S0021859616000010

Article  Google Scholar 

Luningham, J.M., Hendriks, A.M., Krapohl, E., et al., Harmonizing behavioral outcomes across studies, raters, and countries: application to the genetic analysis of aggression in the ACTION consortium, J. Child Psychol. Psychiatry, 2020, vol. 61, no. 7, pp. 807–817. https://doi.org/10.1111/jcpp.13188

Article  PubMed  PubMed Central  Google Scholar 

Canario, L., Bijma, P., David, I., et al., Prospects for the analysis and reduction of damaging behaviour in group-housed livestock, with application to pig breeding, Front. Genet., 2020, vol. 11, p. 611073. https://doi.org/10.3389/fgene.2020.611073

Article  PubMed  PubMed Central  Google Scholar 

Duclot, F. and Kabbaj, M., Epigenetics of aggression, Curr. Top. Behav. Neurosci., 2022, vol. 54, pp. 283–310. https://doi.org/10.1007/7854_2021_252

Article  CAS  PubMed  Google Scholar 

Rabhi, N., Thibodeau, A., Côté, J.C., et al., Association between tail-biting and intestinal microbiota composition in pigs, Front. Vet. Sci., 2020, vol. 7, p. 563762. https://doi.org/10.3389/fvets.2020.563762

Article  PubMed  PubMed Central  Google Scholar 

Fujiyuki, T., Takeuchi, H., Ono, M., et al., Novel insect picorna-like virus identified in the brains of aggressive worker honeybees, J. Virol., 2004, vol. 78, pp. 1093–1100. https://doi.org/10.1128/jvi.78.3.1093-1100.2004

Article  CAS  PubMed  PubMed Central  Google Scholar 

Azadian, A., Hanifeh, M., and Firouzamandi, M., The incidence of aggressive behavior in cats naturally infected with feline immunodeficiency virus (FIV) and its interaction with FIV disease progression, Vet. Ital., 2020, vol. 56, pp. 169–176. https://doi.org/10.12834/VetIt.1795.9466.3

Article  PubMed  Google Scholar 

Shannon, T.E. and Griffin, S.L., Managing aggression in global amnesia following herpes simplex virus encephalitis: the case of E.B., Brain. Inj., 2015, vol. 29, no. 1, pp. 118–124. https://doi.org/10.3109/02699052.2014.954623

Article  PubMed  Google Scholar 

Bartley, C.M., Johns, C., Ngo, T.T., et al., Anti-SARS-CoV-2 and autoantibody profiles in the cerebrospinal fluid of 3 teenaged patients with COVID-19 and subacute neuropsychiatric symptoms, JAMA Neurol., 2021, vol. 78, pp. 1503–1509. https://doi.org/10.1001/jamaneurol.2021.3821

Article  PubMed  PubMed Central  Google Scholar 

Mustafin, R.N., Relationship of antiviral proteins with retroelements in the brain in pathogenesis of neurodegenerative diseases, Curr. Proteomics, 2024, vol. 21, pp. 657–680. https://doi.org/10.2174/0115701646349195250327051422

Article  CAS  Google Scholar 

Jiang, T., Zhou, Z.M., Ling, Z.Q., et al., Pig H3K4me3, H3K27ac, and gene expression profiles reveal reproductive tissue-specific activity of transposable elements, Zool. Res., 2024, vol. 45, no. 1, pp. 138–151. https://doi.org/10.24272/j.issn.2095-8137.2023.060

Article  CAS  PubMed  PubMed Central  Google Scholar 

Li, M., Tian, S., Jin, L., et al., Genomic analyses identify distinct patterns of selection in domesticated pigs and Tibetan wild boars, Nat. Genet., 2013, vol. 45, no. 12, pp. 1431–1438. https://doi.org/10.1038/ng.2811

Article  CAS  PubMed  Google Scholar 

Li, M., Chen, L., Tian, S., et al., Comprehensive variation discovery and recovery of missing sequence in the pig genome using multiple de novo assemblies, Genome Res., 2017, vol. 27, no. 5, pp. 865–874. https://doi.org/10.1101/gr.207456.116

Article  CAS  PubMed  Google Scholar 

Zhao, P., Gu, L., Gao, Y., et al., Young SINEs in pig genomes impact gene regulation, genetic diversity, and complex traits, Commun. Biol., 2023, vol. 6, no. 1, p. 894. https://doi.org/10.1038/s42003-023-05234-x

Article  CAS  PubMed  PubMed Central  Google Scholar 

Nurk, S., Koren, S., Rhie, A., et al., The complete sequence of a human genome, Science, 2022, vol. 376, no. 6588, pp. 44–53. https://doi.org/10.1126/science.abj6987

Article  CAS  PubMed  PubMed Central  Google Scholar 

Mustafin, R.N., Kazantseva, A.V., Enikeeva, et al., Epigenetics of aggressive behavior, Russ. J. Genet., 2019, vol. 55, no. 9, pp. 1051–1060. https://doi.org/10.1134/S1022795419090096

Article  CAS  Google Scholar 

Hoyt, S.J., Storer, J.M., Hartley, G.A., et al., From telomere to telomere: the transcriptional and epigenetic state of human repeat elements, Science, 2022, vol. 376, no. 6588, p. eabk3112. https://doi.org/10.1126/science.abk3112

Mustafin, R.N. and Khusnutdinova, E.K., Noncoding regions of the genome as a basis of epigenetic inheritance, Vavilovskii Zh. Genet. Sel., 2017, vol. 21, no. 6, pp. 742–749. https://doi.org/10.18699/10.18699/VJ17.30-o

Article  Google Scholar 

Mustafin, R.N. and Khusnutdinova, E.K., Stress-induced transposon activation during ecological morphogenesis, Vavilovskii Zh. Genet. Sel., 2019, vol. 23, no. 4, pp. 380–389. https://doi.org/10.18699/VJ19.506

Article  Google Scholar 

Wei, G., Qin, S., Li, W., et al., MDTE DB: a database for microRNAs derived from transposable element, IEEE/ACM Trans. Comput. Biol. Bioinf., 2016, vol. 13, no. 6, pp. 1155–1160. https://doi.org/10.1109/TCBB.2015.2511767

Article