Fungal diversity, ecology and functions in soil ecosystems

Case, N. T. et al. Fungal impacts on Earth’s ecosystems. Nature 638, 49–57 (2025).

Article  CAS  PubMed  PubMed Central  Google Scholar 

Yurkov, A. M. Yeasts of the soil — obscure but precious. Yeast 35, 369–378 (2018).

Article  CAS  PubMed  PubMed Central  Google Scholar 

Hawksworth, D. L. & Lücking, R. Fungal diversity revisited: 2.2 to 3.8 million species. Microbiol. Spectr. https://doi.org/10.1128/microbiolspec.funk-0052-2016 (2017).

Baldrian, P., Větrovský, T., Lepinay, C. & Kohout, P. High-throughput sequencing view on the magnitude of global fungal diversity. Fungal Divers. 114, 539–547 (2022).

Article  CAS  Google Scholar 

Anthony, M. A., Bender, S. F. & van der Heijden, M. G. A. Enumerating soil biodiversity. Proc. Natl Acad. Sci. USA 120, e2304663120 (2023).

Article  CAS  PubMed  PubMed Central  Google Scholar 

Wessels, J. G. H. Fungi in their own right. Fungal Genet. Biol. 27, 134–145 (1999).

Article  CAS  PubMed  Google Scholar 

Oyarte Galvez, L. et al. A travelling-wave strategy for plant–fungal trade. Nature 639, 172–180 (2025).

Article  CAS  PubMed  PubMed Central  Google Scholar 

Kokkoris, V. Mycelial dynamics in arbuscular mycorrhizal fungi. New Phytol. https://doi.org/10.1111/nph.70688 (2026).

Article  PubMed  Google Scholar 

de Boer, W., Folman, L. B., Summerbell, R. C. & Boddy, L. Living in a fungal world: impact of fungi on soil bacterial niche development. FEMS Microbiol. Rev. 29, 795–811 (2005).

Article  CAS  Google Scholar 

Tedersoo, L. et al. Global diversity and geography of soil fungi. Science 346, 1256688 (2014).

Article  PubMed  Google Scholar 

Egidi, E. et al. A few Ascomycota taxa dominate soil fungal communities worldwide. Nat. Commun. 10, 2369 (2019).

Article  PubMed  PubMed Central  Google Scholar 

Davison, J. et al. Global assessment of arbuscular mycorrhizal fungus diversity reveals very low endemism. Science 349, 970–973 (2015).

Article  CAS  PubMed  Google Scholar 

van Galen, L. G. et al. Global divergence in plant and mycorrhizal fungal diversity hotspots. Nat. Commun. 16, 6702 (2025).

Article  PubMed  PubMed Central  Google Scholar 

Van Nuland, M. E. et al. Global hotspots of mycorrhizal fungal richness are poorly protected. Nature 645, 414–422 (2025).

Article  PubMed  PubMed Central  Google Scholar 

Mikryukov, V. et al. Connecting the multiple dimensions of global soil fungal diversity. Sci. Adv. 9, eadj8016 (2023).

Article  CAS  PubMed  PubMed Central  Google Scholar 

Vellend, M. The Theory of Ecological Communities (Princeton Univ. Press, 2016).

Vellend, M. Conceptual synthesis in community ecology. Q. Rev. Biol. 85, 183–206 (2010).

Article  PubMed  Google Scholar 

Aguilar-Trigueros, C. A. et al. Branching out: towards a trait-based understanding of fungal ecology. Fungal Biol. Rev. 29, 34–41 (2015).

Article  Google Scholar 

Crowther, T. W. et al. Untangling the fungal niche: the trait-based approach. Front. Microbiol. 5, 579 (2014).

Article  PubMed  PubMed Central  Google Scholar 

Bielčik, M. et al. Aligning spatial ecological theory with the study of clonal organisms: the case of fungal coexistence. Biol. Rev. 99, 2211–2233 (2024).

Article  PubMed  Google Scholar 

Crowther, T. W. & Bradford, M. A. Thermal acclimation in widespread heterotrophic soil microbes. Ecol. Lett. 16, 469–477 (2013).

Article  PubMed  Google Scholar 

Abrego, N. et al. Airborne DNA reveals predictable spatial and seasonal dynamics of fungi. Nature 631, 835–842 (2024).

Article  CAS  PubMed  PubMed Central  Google Scholar 

Peay, K. G., Kennedy, P. G. & Talbot, J. M. Dimensions of biodiversity in the Earth mycobiome. Nat. Rev. Microbiol. 14, 434–447 (2016).

Article  CAS  PubMed  Google Scholar 

Peay, K. G., Baraloto, C. & Fine, P. V. A. Strong coupling of plant and fungal community structure across western Amazonian rainforests. ISME J. 7, 1852–1861 (2013).

Article  CAS  PubMed  PubMed Central  Google Scholar 

Francioli, D., van Ruijven, J., Bakker, L. & Mommer, L. Drivers of total and pathogenic soil-borne fungal communities in grassland plant species. Fungal Ecol. 48, 100987 (2020).

Article  Google Scholar 

Boddy, L. Interspecific combative interactions between wood-decaying basidiomycetes. FEMS Microbiol. Ecol. 31, 185–194 (2000).

Article  CAS  PubMed  Google Scholar 

Boddy, L. & Hiscox, J. Fungal Ecology: principles and mechanisms of colonization and competition by saprotrophic fungi. Microbiol. Spectr. https://doi.org/10.1128/microbiolspec.funk-0019-2016 (2016).

Pena, R. et al. Unravelling the facilitation-competition continuum among ectomycorrhizal and saprotrophic fungi. Soil Biol. Biochem. 208, 109865 (2025).

Article  CAS  Google Scholar 

Wardle, D. A. Communities and Ecosystems: Linking the Aboveground and Belowground Components (MPB-34) (Princeton Univ. Press, 2013).

Crowther, T. W., Boddy, L. & Jones, T. H. Outcomes of fungal interactions are determined by soil invertebrate grazers. Ecol. Lett. 14, 1134–1142 (2011).

Article  PubMed  Google Scholar 

Moore, D., Robson, G. D. & Trinci, A. P. J. 21st Century Guidebook to Fungi https://doi.org/10.1017/9781108776387 (Cambridge Univ. Press, 2020).

Chaudhary, V. B., Aguilar-Trigueros, C. A., Mansour, I. & Rillig, M. C. Fungal dispersal across spatial scales. Annu. Rev. Ecol. Evol. Syst. 53, 69–85 (2022).

Article  Google Scholar 

Pellitier, P. T. et al. Wind patterns influence the dispersal and assembly of north american soil fungal communities. Ecol. Lett. 28, e70130 (2025).

Article  PubMed  Google Scholar 

Aguilar-Trigueros, C. A. et al. Symbiotic status alters fungal eco-evolutionary offspring trajectories. Ecol. Lett. 26, 1523–1534 (2023).

Article  PubMed  Google Scholar 

Fukami, T. Historical contingency in community assembly: integrating niches, species pools, and priority effects. Annu. Rev. Ecol. Evol. Syst. 46, 1–23 (2015).

Article  Google Scholar 

Dalpé, Y., Séguin, S. & Chagnon, P.-L. Glomeromycetes from the Magdalen Islands archipelago: analyzing diversity and meta-community structure in a sand-dune ecosystem. Botany 94, 1195–1208 (2016).

Article  Google Scholar 

Beck, S., Anderson, I. C., Drigo, B. & Powell, J. R. A soil fungal metacommunity perspective reveals stronger and more localised interactions above the tree line of an alpine/subalpine ecotone. Soil Biol. Biochem. 135, 1–9 (2019).

Article  CAS  Google Scholar 

Dickie, I. A., Fukami, T., Wilkie, J. P., Allen, R. B. & Buchanan, P. K. Do assembly history effects attenuate from species to ecosystem properties? A field test with wood-inhabiting fungi. Ecol. Lett. 15, 133–141 (2012).

Article  PubMed  Google Scholar 

Caruso, T., Hempel, S., Powell, J. R., Barto, E. K. & Rillig, M. C. Compositional divergence and convergence in arbuscular mycorrhizal fungal communities. Ecology 93, 1115–1124 (2012).

Article  CAS  PubMed 

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