A transcriptional atlas of gyrification reveals dynamic spatio-temporal gene expression in the developing ferret cortex

Andrews S (2010) FastQC: A quality control tool for high throughput sequence data. http://www.bioinformatics.babraham.ac.uk/projects/fastqc

Armstrong E, Schleicher A, Omran H, Curtis M, Zilles K (1995) The ontogeny of human gyrification. Cereb Cortex 5(1):56–63. https://doi.org/10.1093/cercor/5.1.56

Article  CAS  PubMed  Google Scholar 

Barresi M, Hickmott RA, Bosakhar A, Quezada S, Quigley A, Kawasaki H, Walker D, Tolcos M (2024) Toward a better understanding of how a gyrified brain develops. Cereb Cortex 34(2):bhae055

Article  PubMed  Google Scholar 

Bolger AM, Lohse M, Usadel B (2014) Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics 30(15):2114–2120

Article  CAS  PubMed  PubMed Central  Google Scholar 

Burnouf T, Walker TL (2022) The multifaceted role of platelets in mediating brain function. Blood 140(8):815–827. https://doi.org/10.1182/blood.2022015970

Article  CAS  PubMed  PubMed Central  Google Scholar 

de Juan Romero C, Borrell V (2017) Genetic maps and patterns of cerebral cortex folding. Curr Opin Cell Biol 49:31–37. https://doi.org/10.1016/j.ceb.2017.11.009

Article  CAS  PubMed  Google Scholar 

de Juan Romero C, Bruder C, Tomasello U, Sanz-Anquela JM, Borrell V (2015) Discrete domains of gene expression in germinal layers distinguish the development of gyrencephaly. EMBO J 34(14):1859–1874. https://doi.org/10.15252/embj.201591176

Article  CAS  PubMed  PubMed Central  Google Scholar 

Del-Valle-Anton L, Borrell V (2022) Folding brains: from development to disease modeling. Physiol Rev 102(2):511–550. https://doi.org/10.1152/physrev.00016.2021

Article  CAS  PubMed  Google Scholar 

Del-Valle-Anton L, Amin S, Cimino D, Neuhaus F, Dvoretskova E, Fernandez V, Babal YK, Garcia-Frigola C, Prieto-Colomina A, Murcia-Ramon R, Nomura Y, Cardenas A, Feng C, Moreno-Bravo JA, Gotz M, Mayer C, Borrell V (2024) Multiple parallel cell lineages in the developing mammalian cerebral cortex. Sci Adv 10(13):eadn9998. https://doi.org/10.1126/sciadv.adn9998

Article  CAS  PubMed  PubMed Central  Google Scholar 

Di C, Mladkova N, Lin J, Fee B, Rivas M, Chunsheng K, Bigner D, Adamson DC (2018) AJAP1 expression modulates glioma cell motility and correlates with tumor growth and survival. Int J Oncol 52(1):47–54

CAS  PubMed  Google Scholar 

Didychuk AL, Butcher SE, Brow DA (2018) The life of U6 small nuclear RNA, from cradle to grave. RNA 24(4):437–460. https://doi.org/10.1261/rna.065136.117

Article  CAS  PubMed  PubMed Central  Google Scholar 

Dobin A, Davis CA, Schlesinger F, Drenkow J, Zaleski C, Jha S, Batut P, Chaisson M, Gingeras TR (2013) STAR: ultrafast universal RNA-seq aligner. Bioinformatics 29(1):15–21

Article  CAS  PubMed  Google Scholar 

Fietz SA, Kelava I, Vogt J, Wilsch-Brauninger M, Stenzel D, Fish JL, Corbeil D, Riehn A, Distler W, Nitsch R, Huttner WB (2010) OSVZ progenitors of human and ferret neocortex are epithelial-like and expand by integrin signaling. Nat Neurosci 13(6):690–699. https://doi.org/10.1038/nn.2553

Article  CAS  PubMed  Google Scholar 

Fietz SA, Lachmann R, Brandl H, Kircher M, Samusik N, Schroder R, Lakshmanaperumal N, Henry I, Vogt J, Riehn A, Distler W, Nitsch R, Enard W, Paabo S, Huttner WB (2012) Transcriptomes of germinal zones of human and mouse fetal neocortex suggest a role of extracellular matrix in progenitor self-renewal. Proc Natl Acad Sci U S A 109(29):11836–11841. https://doi.org/10.1073/pnas.1209647109

Article  PubMed  PubMed Central  Google Scholar 

Florio M, Albert M, Taverna E, Namba T, Brandl H, Lewitus E, Haffner C, Sykes A, Wong FK, Peters J, Guhr E, Klemroth S, Prufer K, Kelso J, Naumann R, Nusslein I, Dahl A, Lachmann R, Paabo S, Huttner WB (2015) Human-specific gene ARHGAP11B promotes basal progenitor amplification and neocortex expansion. Science 347(6229):1465–1470. https://doi.org/10.1126/science.aaa1975

Article  CAS  PubMed  Google Scholar 

Florio M, Borrell V, Huttner WB (2017) Human-specific genomic signatures of neocortical expansion. Curr Opin Neurobiol 42:33–44. https://doi.org/10.1016/j.conb.2016.11.004

Article  CAS  PubMed  Google Scholar 

Gilardi C, Kalebic N (2021) The Ferret as a Model System for Neocortex Development and Evolution. Front Cell Dev Biol 9:661759. https://doi.org/10.3389/fcell.2021.661759

Article  PubMed  PubMed Central  Google Scholar 

Güven A, Kalebic N, Long KR, Florio M, Vaid S, Brandl H, Stenzel D, Huttner WB (2020) Extracellular matrix-inducing Sox9 promotes both basal progenitor proliferation and gliogenesis in developing neocortex. Elife 9:e49808. https://doi.org/10.7554/eLife.49808

Article  PubMed  PubMed Central  Google Scholar 

Hansen DV, Lui JH, Parker PR, Kriegstein AR (2010) Neurogenic radial glia in the outer subventricular zone of human neocortex. Nature 464(7288):554–561. https://doi.org/10.1038/nature08845

Article  CAS  PubMed  Google Scholar 

Hasan A, McIntosh AM, Droese UA, Schneider-Axmann T, Lawrie SM, Moorhead TW, Tepest R, Maier W, Falkai P, Wobrock T (2011) Prefrontal cortex gyrification index in twins: an MRI study. Eur Arch Psychiatry Clin Neurosci 261(7):459–465. https://doi.org/10.1007/s00406-011-0198-2

Article  PubMed  PubMed Central  Google Scholar 

Hayon Y, Dashevsky O, Shai E, Varon D, Leker RR (2012) Platelet microparticles promote neural stem cell proliferation, survival and differentiation. J Mol Neurosci 47(3):659–665. https://doi.org/10.1007/s12031-012-9711-y

Article  CAS  PubMed  Google Scholar 

Heide M, Haffner C, Murayama A, Kurotaki Y, Shinohara H, Okano H, Sasaki E, Huttner WB (2020) Human-specific ARHGAP11B increases size and folding of primate neocortex in the fetal marmoset. Science 369(6503):546–550. https://doi.org/10.1126/science.abb2401

Article  CAS  PubMed  Google Scholar 

Javaherian A, Kriegstein A (2009) A stem cell niche for intermediate progenitor cells of the embryonic cortex. Cerebral cortex 19 (suppl_1):i70–i77

Ju XC, Hou QQ, Sheng AL, Wu KY, Zhou Y, Jin Y, Wen T, Yang Z, Wang X, Luo ZG (2016) The hominoid-specific gene TBC1D3 promotes generation of basal neural progenitors and induces cortical folding in mice. Elife 5. https://doi.org/10.7554/eLife.18197

Kazanis I, Feichtner M, Lange S, Rotheneichner P, Hainzl S, Öller M, Schallmoser K, Rohde E, Reitsamer HA, Couillard-Despres S (2015) Lesion-induced accumulation of platelets promotes survival of adult neural stem/progenitor cells. Exp Neurol 269:75–89

Article  CAS  PubMed  Google Scholar 

Keidar L, Gerlitz G, Kshirsagar A, Tsoory M, Olender T, Wang X, Yang Y, Chen YS, Yang YG, Voineagu I, Reiner O (2019) Interplay of LIS1 and MeCP2: Interactions and Implications With the Neurodevelopmental Disorders Lissencephaly and Rett Syndrome. Front Cell Neurosci 13:370. https://doi.org/10.3389/fncel.2019.00370

Article  CAS  PubMed  PubMed Central  Google Scholar 

Kelava I, Lewitus E, Huttner WB (2013) The secondary loss of gyrencephaly as an example of evolutionary phenotypical reversal. Front Neuroanat 7:16

Article  PubMed  PubMed Central  Google Scholar 

Leiter O, Seidemann S, Overall RW, Ramasz B, Rund N, Schallenberg S, Grinenko T, Wielockx B, Kempermann G, Walker TL (2019) Exercise-Induced Activated Platelets Increase Adult Hippocampal Precursor Proliferation and Promote Neuronal Differentiation. Stem Cell Rep 12(4):667–679. https://doi.org/10.1016/j.stemcr.2019.02.009

Article  CAS  Google Scholar 

Lewitus E, Kelava I, Kalinka AT, Tomancak P, Huttner WB (2014) An adaptive threshold in mammalian neocortical evolution. PLoS Biol 12(11):e1002000. https://doi.org/10.1371/journal.pbio.1002000

Article  CAS  PubMed  PubMed Central  Google Scholar 

Li Y, Muffat J, Omer A, Bosch I, Lancaster MA, Sur M, Gehrke L, Knoblich JA, Jaenisch R (2017) Induction of Expansion and Folding in Human Cerebral Organoids. Cell Stem Cell 20(3):385–396e383. https://doi.org/10.1016/j.stem.2016.11.017

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