Alhariri A, Behera TK, Jat GS, Devi MB, Boopalakrishnan G, Hemeda NF, et al. Analysis of genetic diversity and population structure in bitter gourd (Momordica charantia L.) using morphological and SSR markers. Plants. 2021. https://doi.org/10.3390/plants10091860.
Article PubMed PubMed Central Google Scholar
Annicchiarico P, Nazzicari N, Ananta A, Carelli M, Wei Y, Brummer EC. Assessment of cultivar distinctness in alfalfa: a comparison of genotyping-by-sequencing, simple-sequence repeat marker, and morphophysiological observations. Plant Genome. 2016. https://doi.org/10.3835/plantgenome2015.10.0105.
Bashalkhanov S, Pandey M, Rajora OP. A simple method for estimating genetic diversity in large populations from finite sample sizes. BMC Genet. 2009. https://doi.org/10.1186/1471-2156-10-84.
Article PubMed PubMed Central Google Scholar
Bernardo R. Essentials of plant breeding. 2nd ed. Woodbury, Minnesota: Stemma press; 2023.
Botstein D, White RL, Skolnick M, Davis RW. Construction of a genetic linkage map in man using restriction fragment length polymorphisms. Am J Hum Genet. 1980;32:314.
CAS PubMed PubMed Central Google Scholar
Chomicki G, Schaefer H, Renner SS. Origin and domestication of Cucurbitaceae crops: insights from phylogenies, genomics and archaeology. New Phytol. 2020. https://doi.org/10.1111/nph.16015.
Cui J, Cheng J, Nong D, Peng J, Hu Y, He W, et al. Genome-wide analysis of simple sequence repeats in bitter gourd (Momordica charantia). Front Plant Sci. 2017. https://doi.org/10.3389/fpls.2017.01103.
Article PubMed PubMed Central Google Scholar
Dutta S, Kumawat G, Singh BP, Gupta DK, Singh S, Dogra V, et al. Development of genic-SSR markers by deep transcriptome sequencing in pigeonpea [Cajanus cajan (L.) Millspaugh]. BMC Plant Biol. 2011. https://doi.org/10.1186/1471-2229-11-17.
Article PubMed PubMed Central Google Scholar
Dutta S, Mahato AK, Sharma P, Raje RS, Sharma TR, Singh NK. Highly variable ‘Arhar’ simple sequence repeat markers for molecular diversity and phylogenetic studies in pigeonpea [Cajanus cajan (L.) Millisp.]. Plant Breed. 2013. https://doi.org/10.1111/pbr.12014.
Falk DE. Generating and maintaining diversity at the elite level in crop breeding. Genome. 2010. https://doi.org/10.1139/G10-081.
Gemayel R, Cho J, Boeynaems S, Verstrepen KJ. Beyond junk-variable tandem repeats as facilitators of rapid evolution of regulatory and coding sequences. Genes. 2012. https://doi.org/10.3390/genes3030461.
Article PubMed PubMed Central Google Scholar
Guo X, Elston R. Linkage information content of polymorphic genetic markers. Hum Hered. 1999. https://doi.org/10.1159/000022855.
Hartl DL, Clark AG. Principles of population genetics. Sunderland: Sinauer associates; 1997.
Hoisington D, Khairallah M, Gonzalez-De-Leon D. Laboratory Protocols. 2nd edition, CIMMY Tapplied molecular genetics laboratory. Mexico, D. F., CIMMYT; 1994.
Kanaka KK, Sukhija N, Goli RC, Singh S, Ganguly I, Dixit SP, et al. On the concepts and measures of diversity in the genomics era. Curr Plant Biol Curr Plant Biol. 2023;2023(33):100278. https://doi.org/10.1016/j.cpb.2023.100278.
Kashi Y, King DG. Simple sequence repeats as advantageous mutators in evolution. Trends Genet. 2006. https://doi.org/10.1016/j.tig.2006.03.005.
Kishorkumar GK, Jawadagi RS, Evoor S, Raut N, Ryavalad S, Haveri N, et al. Evaluation of bitter gourd (Momordica charantia L.) genotypes for growth, yield and quality traits. Plant Arch. 2025;25:912–9.
Laurentin H. Data analysis for molecular characterization of plant genetic resources. Genet Resour Crop Evol. 2009. https://doi.org/10.1007/s10722-008-9397-8.
Liu K, Muse SV. Power marker: an integrated analysis environment for genetic marker analysis. Bioinformatics. 2005. https://doi.org/10.1093/bioinformatics/bti282.
Article PubMed PubMed Central Google Scholar
Mallikarjuna KN, Tomar BS, Mangal M, Singh N, Singh D, Kumar S, et al. Genetic diversity and population structure analyses in bitter gourd (Momordica charantia L.) based on agro-morphological and microsatellite markers. Plants. 2023. https://doi.org/10.3390/plants12193512.
Article PubMed PubMed Central Google Scholar
Marr KL, Mei XY, Bhattarai NK. Allozyme, morphological and nutritional analysis bearing on the domestication of Momordica charantia L. (Cucurbitaceae). Econ Bot. 2004. https://doi.org/10.1663/0013-0001(2004)058[0435:AMANAB]2.0.CO;2.
Meghashree RJ, Ganiger VM, Kumar JSA, Bhuvaneshwari G, Gopali JB, Evoor S, et al. Genetic diversity and population structure assessment of Indian bitter gourd accessions using nutritional content and molecular markers. Genet Resour Crop Evol. 2024. https://doi.org/10.1007/s10722-023-01709-2.
Nei M. Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics. 1978. https://doi.org/10.1093/genetics/89.3.583.
Article PubMed PubMed Central Google Scholar
Nei M. Molecular evolutionary genetics. Columbia University Press; 1987.
Nepolean T, Singh I, Hossain F, Pandey N, Gupta HS. Molecular characterization and assessment of genetic diversity of inbred lines showing variability for drought tolerance in maize. J Plant Biochem Biotechnol. 2013. https://doi.org/10.1007/s13562-012-0112-7.
Panigrahi I, Behera TK, Munshi AD, Dey SS, Gaikwad AB, Senapati M. SSR markers-based QTL mapping and genetic analysis for yield and yield-attributing traits in bitter gourd (Momordica charantia L.). S Afr J Bot. 2024. https://doi.org/10.1016/j.sajb.2024.09.049.
Perrier X, Flori A, Bonnot F. Data analysis methods. In: Hamon P, Seguin M, Perrier X, editors. Genetic diversity of cultivated tropical plants. Enfield: Science Publishers; 2003. p. 43–76.
Reif JC, Fischer S, Schrag TA, Lamkey KR, Klein D, Dhillon BS, et al. Broadening the genetic base of European maize heterotic pools with US Cornbelt germplasm using field and molecular marker data. Theor Appl Genet. 2010. https://doi.org/10.1007/s00122-009-1055-9.
Renner SS. Bitter gourd from Africa expanded to Southeast Asia and was domesticated there: a new insight from parallel studies. Proc Natl Acad Sci U S A. 2020. https://doi.org/10.1073/pnas.2014454117.
Article PubMed PubMed Central Google Scholar
Saxena S, Singh A, Archak S, Behera TK, John JK, Meshram SU, et al. Development of novel simple sequence repeat markers in bitter gourd (Momordica charantia L.) through enriched genomic libraries and their utilization in analysis of genetic diversity and cross-species transferability. Appl Biochem Biotechnol. 2015. https://doi.org/10.1007/s12010-014-1249-8.
Schaefer H, Renner SS. A three-genome phylogeny of Momordica (Cucurbitaceae) suggests seven returns from dioecy to monoecy and recent long-distance dispersal to Asia. Mol Phylogenet Evol. 2010. https://doi.org/10.1016/j.ympev.2009.08.006.
Shannon CE. A mathematical theory of communication. Bell Syst Tech J. 1948;27:379–423.
Siddu C, Ramesh S, Basanagouda G, Kalpana M. SSR marker-based diversity among elite maize (Zea mays L.) inbred lines and parents of elite single cross hybrids with known heterotic groups. Mysore J Agric Sci. 2023;57:320–32.
Sirisha P, Pushpavalli SNCVL, Vanish S, Reddy MR, Sujatha P. Identification of unique alleles and assessment of genetic diversity of soybean genotypes using SSR markers and seed traits. Electron J Plant Breed. 2021. https://doi.org/10.37992/2021.1202.080.
Smouse RP, Peakall R. GenAlEx 65: Genetic analysis in Excel: Population genetic software for teaching and research-an update. Bioinform. 2012. https://doi.org/10.1111/j.1471-8286.2005.01155.x.
Spellerberg IF, Fedor PJ. A tribute to Claude Shannon (1916–2001) and a plea for more rigorous use of species richness, species diversity and the ‘Shannon–Wiener’Index. Glob Ecol Biogeogr. 2003. https://doi.org/10.1046/j.1466-822X.2003.00015.x.
Comments (0)