Bedade DK, Edson CB, Gross RA (2021) Emergent approaches to efficient and sustainable polyhydroxyalkanoate production. Molecules 26(11):3463. https://doi.org/10.3390/molecules26113463

Article  CAS  PubMed  PubMed Central  Google Scholar 

Bertelli C, Laird MR, Williams KP, Simon Fraser University Research Computing Group, Lau BY, Hoad G, Winsor GL, Brinkman FSL (2017) Nucleic Acids Res 45:W30–W35. IslandViewer 4: expanded prediction of genomic islands for larger-scale datasets. https://doi.org/10.1093/nar/gkx343

Bresan S, Sznajder A, Hauf W, Forchhammer K, Pfeiffer D, Jendrossek D (2016) Polyhydroxyalkanoate (PHA) granules have no phospholipid monolayer. Sci Rep 6:26612. https://doi.org/10.1038/srep26612

Article  CAS  PubMed  PubMed Central  Google Scholar 

Chek MF, Hiroe A, Hakoshima T, Sudesh K, Taguchi S (2019) PHA synthase (PhaC): interpreting the functions of bioplastic-producing enzyme from a structural perspective. Appl Microbiol Biotechnol 103:1131–1141. https://doi.org/10.1007/s00253-018-9538-8

Article  CAS  PubMed  Google Scholar 

Cumsille A, Serna-Cardona N, González V, Claverías F, Undabarrena A, Molina V, Salvà-Serra F, Moore ER, Cámara B (2023) Exploring the biosynthetic gene clusters in Brevibacterium: a comparative genomic analysis of diversity and distribution. BMC Genomics 24(1):622. https://doi.org/10.1186/s12864-023-09694-7

Article  CAS  PubMed  PubMed Central  Google Scholar 

da Silva Filho AC, Raittz RT, Guizelini D, De Pierri CR, Augusto DW, Dos Santos-Weiss ICR, Marchaukoski JN (2018) Comparative Analysis of Genomic Island Prediction Tools. Genet Mol Biol 41:312–320. https://doi.org/10.1590/1678-4685-GMB-2017-0325

Article  Google Scholar 

Forquin-Gomez MP, Weimer BC, Sorieul L, Kalinowski J, Vallaeys T (2014) The family Brevibacteriaceae. Prokaryotes Actinobacteria, 4th edn. Springer, Berlin, Heidelberg. 141 – 53https://doi.org/10.1007/978-3-642-30138-4_169

Jendrossek D (2009) Polyhydroxyalkanoate granules are complex subcellular organelles (carbonosomes). J Bacteriol 19:3195–3202. https://doi.org/10.1128/JB.01723-08

Article  CAS  Google Scholar 

Jia K, Cao R, Hua DH, Li P (2016) Study of Class I and Class III Polyhydroxyalkanoate (PHA) Synthases with Substrates Containing a Modified Side Chain. Biomacromolecules 17:1477–1485. https://doi.org/10.1021/acs.biomac.6b00082

Article  CAS  PubMed  PubMed Central  Google Scholar 

Jiang X, Luo X, Zhou N (2015) Two Polyhydroxyalkanoate Synthases from Distinct Classes from the Aromatic Degrader Cupriavidus pinatubonensis JMP134 Exhibit the Same Substrate Preference. PLoS ONE. https://doi.org/10.1371/journal.pone.0142332

Article  PubMed  PubMed Central  Google Scholar 

Khatami K, Perez-Zabaleta M, Owusu-Agyeman I, Cetecioglu Z (2021) Waste to bioplastics: How close are we to sustainable polyhydroxyalkanoates production? Waste Manag 119:374–388. https://doi.org/10.1016/j.wasman.2020.10.008

Article  CAS  PubMed  Google Scholar 

Kumar M, Rathour R, Singh R, Sun Y, Pandey A, Gnansounou E, Lin KYA, Tsang DC, Thakur IS (2020) Bacterial polyhydroxyalkanoates: Opportunities, challenges, and prospects. J Cle Prod 263:121500

Article  CAS  Google Scholar 

Langille MGI, Hsiao WWL, Brinkman FSL (2008) Evaluation of genomic island predictors using a comparative genomics approach. BMC Bioinformatics 9:329. https://doi.org/10.1186/1471-2105-9-329

Article  CAS  PubMed  PubMed Central  Google Scholar 

Lee SD (2008) Brevibacterium marinum sp. nov., isolated from seawater. Int J Syst Evol Microbiol 58(2):500–504. https://doi.org/10.1099/ijs.0.65099-0

Article  CAS  PubMed  Google Scholar 

Lomsadze A, Gemayel K, Tang S, Borodovsky M (2018) Modeling leaderless transcription and atypical genes results in more accurate gene prediction in prokaryotes. Genome Res 28:1079–1089. https://doi.org/10.1101/gr.230615.117

Article  CAS  PubMed  PubMed Central  Google Scholar 

Możejko-Ciesielska J, Kiewisz R (2016) Bacterial polyhydroxyalkanoates: Still fabulous? Microbiol Res 192:271–282. https://doi.org/10.1016/j.micres.2016.07.010

Article  CAS  PubMed  Google Scholar 

Nambu Y, Ishii-Hyakutake M, Harada K, Mizuno S, Tsuge T (2020) Expanded amino acid sequence of the PhaC box in the active center of polyhydroxyalkanoate synthases. FEBS Lett 594(4):710–716. https://doi.org/10.1002/1873-3468.13651

Article  CAS  PubMed  Google Scholar 

Neoh SZ, Chek MF, Tan HT, Linares-Pastén JA, Nandakumar A, Hakoshima T, Sudesh K (2022) Polyhydroxyalkanoate synthase (PhaC): The key enzyme for biopolyester synthesis. C Res Biotec 4:87–101. https://doi.org/10.1016/j.crbiot.2022.01.002

Article  CAS  Google Scholar 

Nomura CT, Taguchi K, Gan Z, Kuwabara K, Tanaka T, Takase K, Doi Y (2005) Expression of 3-ketoacyl-acyl carrier protein reductase (fabG) genes enhances production of polyhydroxyalkanoate copolymer from glucose in recombinant Escherichia coli JM109. Appl Environ Microbiol 71(8):4297–4306. https://doi.org/10.1128/AEM.71.8.4297-4306.2005

Article  CAS  PubMed  PubMed Central  Google Scholar 

Rathna RP, Kulandhaivel M (2024) Sustainable synthesis of biopolymer polyhydroxybutyrate (PHB) from agro-residue by Brevibacterium casei with emphasis on degradation analysis. J P App Microb 18:347–366. https://doi.org/10.22207/jpam.18.1.18

Article  CAS  Google Scholar 

Ratnaningrum D, Endah ES, Abdullah AHD, Saraswaty V, Lisdiyanti P, Frasnawaty E, Priatini S (2021) The effect of inoculum and glucose addition on polyhydroxyalkanoate production by Brevibacterium sp. B45. M Perkeb 89(1). https://doi.org/10.22302/iribb.jur.mp.v89i1.387

Rehm BH (2003) Polyester synthases: natural catalysts for plastics. Biochem J 376:15–33. https://doi.org/10.1042/BJ20031254

Article  CAS  PubMed  PubMed Central  Google Scholar 

Rehm BH, Mitsky TA, Steinbüchel A (2001a) Role of Fatty Acid De Novo Biosynthesis in Polyhydroxyalkanoic Acid (PHA) and Rhamnolipid Synthesis by Pseudomonads: Establishment of the Transacylase (PhaG)-Mediated Pathway for PHA Biosynthesis in Escherichia coli. Appl Environ Microbiol 67. https://doi.org/10.1128/AEM.67.7.3102-3109.2001

Rehm BH, Krüger N, Steinbüchel A (2001b) A new metabolic link between fatty acid de novo synthesis and polyhydroxyalkanoic acid synthesis: the transacylase PhaG from Pseudomonas aeruginosa mediates the synthesis of poly(3-hydroxyalkanoates) from nonrelated carbon sources. J Biol Chem 276:23862–23867. https://doi.org/10.1074/jbc.M101847200

Article  Google Scholar 

Santin A, Spatola Rossi T, Morlino MS, Gupte AP, Favaro L, Morosinotto T, Treu L, Campanaro S (2024) Autotrophic poly-3-hydroxybutyrate accumulation in Cupriavidus necator for sustainable bioplastic production triggered by nutrient starvation. B Tech 406:131068. https://doi.org/10.1016/j.biortech.2024.131068

Article  CAS  Google Scholar 

Saratale RG, Cho SK, Saratale GD, Kadam AA, Ghodake GS, Kumar M, Bharagava RN, Kumar G, Kim DS, Mulla SI, Shin HS (2021) A comprehensive overview and recent advances on polyhydroxyalkanoates (PHA) production using various organic waste streams. Bioresour Technol 325:124685. https://doi.org/10.1016/j.biortech.2021.124685

Article  CAS  Google Scholar 

Shahid S, Corroler D, Mosrati R, Amiel C, Gaillard JL (2021) New model development for qualitative and quantitative analysis of microbial polyhydroxyalkanoates: A comparison of Fourier Transform Infrared Spectroscopy with Gas Chromatography. J Biotechnol 10(329):38–48. https://doi.org/10.1016/j.jbiotec.2021.01.018

Article  CAS  Google Scholar 

Sivashankari RM, Mierzati M, Miyahara Y, Mizuno S, Nomura CT, Taguchi S, Abe H, Tsuge T (2023) Exploring Class I polyhydroxyalkanoate synthases with diversified monomer specificity. Front Bioeng Biotechnol 11:1114946. https://doi.org/10.3389/fbioe.2023.1114946

Article  PubMed  PubMed Central  Google Scholar 

Steinbüchel A, Hein S (2001) Biochemical and Molecular Basis of Microbial Synthesis of Polyhydroxyalkanoates in Microorganisms. In: Babel W, Steinbüchel A (eds) Biopolyesters. Advances in Biochemical Engineering/Biotechnology, vol 71. Springer, Berlin, Heidelberg. https://doi.org/10.1007/3-540-40021-4-3.

Chapter  Google Scholar 

Taboada B, Estrada K, Ciria R, Merino E (2018) Operon-mapper: a web server for precise operon identification in bacterial and archaeal genomes. Bioinformatics 34:4118–4120. https://doi.org/10.1093/bioinformatics/bty496

Article  CAS  PubMed  PubMed Central  Google Scholar 

Tang HJ, Kahar UM, Sudesh K (2022) A review on poly(3-hydroxybutyrate-co-3-hydroxyhexanoate) (PHBHHx): synthesis and applications. Polym (Basel) 14:5219. https://doi.org/10.3390/polym14235219

Article  CAS  Google Scholar