Metabolic profiling and genetic tool development in the mucosal bacterium

Bang Y-J (2023) Vitamin A: a key coordinator of host-microbe interactions in the intestine. BMB Rep 56(3):133

Article  CAS  PubMed  PubMed Central  Google Scholar 

Bang Y-J et al (2021) Serum amyloid A delivers retinol to intestinal myeloid cells to promote adaptive immunity. Science 373(6561):eabf9232

Article  CAS  PubMed  PubMed Central  Google Scholar 

Blötz C, Stülke J (2017) Glycerol metabolism and its implication in virulence in Mycoplasma. FEMS Microbiol Rev 41(5):640–652. https://doi.org/10.1093/femsre/fux033

Article  CAS  PubMed  Google Scholar 

Bumann D (2001) In vivo visualization of bacterial colonization, antigen expression, and specific T-cell induction following oral administration of live recombinant Salmonella enterica serovar Typhimurium. Infect Immun 69(7):4618–4626

Article  CAS  PubMed  PubMed Central  Google Scholar 

Cho H et al (2023) Selenomonassputigena acts as a pathobiont mediating spatial structure and biofilm virulence in early childhood caries. Nat Commun 14(1):2919

Article  CAS  PubMed  PubMed Central  Google Scholar 

Choi W et al (2024) Discovery of a small-molecule inhibitor targeting the biofilm regulator BrpT in Vibrio vulnificus. J Microbiol Biotechnol 34(11):2201. https://doi.org/10.4014/jmb.2406.06052

Article  CAS  PubMed  PubMed Central  Google Scholar 

Commichau FM, Forchhammer K, Stülke J (2006) Regulatory links between carbon and nitrogen metabolism. Curr Opin Microbiol 9(2):167–172

Article  CAS  PubMed  Google Scholar 

Commichau FM, Gunka K, Landmann JJ, Stülke J (2008) Glutamate metabolism in Bacillus subtilis: gene expression and enzyme activities evolved to avoid futile cycles and to allow rapid responses to perturbations of the system. J Bacteriol 190(10):3557–3564

Article  CAS  PubMed  PubMed Central  Google Scholar 

Corkins ME et al (2017) The gluconate shunt is an alternative route for directing glucose into the pentose phosphate pathway in fission yeast. J Biol Chem 292(33):13823–13832

Article  CAS  PubMed  PubMed Central  Google Scholar 

Druzhinin VG et al (2022) Sputum microbiota in coal workers diagnosed with pneumoconiosis as revealed by 16S rRNA gene sequencing. Life. https://doi.org/10.3390/life12060830

Article  PubMed  PubMed Central  Google Scholar 

Feehily C, Karatzas KAG (2013) Role of glutamate metabolism in bacterial responses towards acid and other stresses. J Appl Microbiol 114(1):11–24. https://doi.org/10.1111/j.1365-2672.2012.05434.x

Article  CAS  PubMed  Google Scholar 

Ge F et al (2022) Transcriptomic and enzymatic analysis reveals the roles of glutamate dehydrogenase in Corynebacterium glutamicum. AMB Express 12(1):161. https://doi.org/10.1186/s13568-022-01506-7

Article  CAS  PubMed  PubMed Central  Google Scholar 

Gea J, Enríquez-Rodríguez CJ, Pascual-Guardia S (2023) Metabolomics in COPD. Arch Bronconeumol 59:311–321

Article  PubMed  Google Scholar 

Ghorbani P et al (2015) Short-chain fatty acids affect cystic fibrosis airway inflammation and bacterial growth. Eur Respir J 46(4):1033–1045

Article  CAS  PubMed  Google Scholar 

Han SO, Inui M, Yukawa H (2008) Effect of carbon source availability and growth phase on expression of Corynebacterium glutamicum genes involved in the tricarboxylic acid cycle and glyoxylate bypass. Microbiology 154(Pt 10):3073–3083

Article  CAS  PubMed  Google Scholar 

Hanson Richard S, Cox Donald P (1967) Effect of different nutritional conditions on the synthesis of tricarboxylic acid cycle enzymes. J Bacteriol 93(6):1777–1787

Article  PubMed Central  Google Scholar 

Hawkes Colin G et al (2023) Selenomonas sputigena interactions with gingival epithelial cells that promote inflammation. Infect Immun 91(2):e00319-e322. https://doi.org/10.1128/iai.00319-22

Article  CAS  PubMed  PubMed Central  Google Scholar 

Hou K et al (2022) Microbiota in health and diseases. Signal Transduct Target Ther 7(1):135. https://doi.org/10.1038/s41392-022-00974-4

Article  PubMed  PubMed Central  Google Scholar 

Huang M-T et al (2023) Short-chain fatty acids ameliorate allergic airway inflammation via sequential induction of PMN-MDSCs and Treg cells. J Allergy Clin Immunol: Global 2(4):100163

PubMed Central  Google Scholar 

Hughes EM, Kiedrowski MR (2025) Effects of elevated glucose on bacterial respiratory infections in cystic fibrosis and chronic airway diseases. Int J Mol Sci. https://doi.org/10.3390/ijms26125597

Article  PubMed  PubMed Central  Google Scholar 

Jacobs MHJ, van der Heide T, Driessen AJM, Konings WN (1996) Glutamate transport in Rhodobacter sphaeroides is mediated by a novel binding protein-dependent secondary transport system. Proc Natl Acad Sci USA 93(23):12786–12790. https://doi.org/10.1073/pnas.93.23.12786

Article  CAS  PubMed  PubMed Central  Google Scholar 

Johnson JL, Holdeman LV, Moore WEC (1985) Replacement of the type strain of Selenomonassputigena under rule 18: request for an opinion. Int J Syst Evol Microbiol 35(3):371–374

Google Scholar 

Jojima T et al (2021) Coexistence of the Entner-Doudoroff and Embden–Meyerhof–Parnas pathways enhances glucose consumption of ethanol-producing Corynebacterium glutamicum. Biotechnol Biofuels 14(1):45. https://doi.org/10.1186/s13068-021-01876-3

Article  CAS  PubMed  PubMed Central  Google Scholar 

Karaffa L, Kubicek CP (2021) Production of Organic Acids by Fungi. In eds. Óscar Zaragoza and Arturo B T - Encyclopedia of Mycology Casadevall. Oxford: Elsevier, 406–19. https://www.sciencedirect.com/science/article/pii/B9780128096338210662.

Karp PD et al (2019) The BioCyc collection of microbial genomes and metabolic pathways. Brief Bioinform 20(4):1085–1093

Article  CAS  PubMed  Google Scholar 

Kim E-J, Cho Y-J, Chung W-H, Roe J-H (2020) The role of Rsv1 in the transcriptional regulation of genes involved in sugar metabolism for long-term survival. FEBS J 287(5):878–896

Article  CAS  PubMed  Google Scholar 

Kim YE et al (2022a) Characterization of an Entner-Doudoroff pathway-activated Escherichia coli. Biotechnol Biofuels Bioprod 15(1):120. https://doi.org/10.1186/s13068-022-02219-6

Article  CAS  PubMed  PubMed Central  Google Scholar 

Kim YC et al (2022b) Selenomonas: a marker of asthma severity with the potential therapeutic effect. Allergy 77(1):317–320

Article  PubMed  Google Scholar 

Kingsley VV, Hoeniger JF (1973) Growth, structure, and classification of Selenomonas. Bacteriol Rev 37(4):479–521

Article  CAS  PubMed  PubMed Central  Google Scholar 

Kornecki JF et al (2020) Enzyme production of D-gluconic acid and glucose oxidase: successful tales of cascade reactions. Catal Sci Technol 10(17):5740–5771. https://doi.org/10.1039/D0CY00819B

Article  CAS  Google Scholar 

Liou G-G et al (2022) Combined transcriptomic and proteomic profiling of E. coli under microaerobic versus aerobic conditions: the multifaceted roles of noncoding small RNAs and oxygen-dependent sensing in global gene expression control. Int J Mol Sci. https://doi.org/10.3390/ijms23052570

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