Genetic diversity of in Latin American Creole cattle: an update of the state of the art

Agina OA, Rosly MS, Nur Mahiza MI, Ajat M, Zamri-Saad M, Hamzah H (2023) PCR-sequence based typing identified 16 novel bovine leukocyte antigen alleles in crossbred Kedah-Kelantan and Bali cattle, and BoLA-DRB3.2*020:02:01 was associated with resistance to Theileria orientalis infection in crossbred Kedah-Kelantan cattle. SSRN. https://doi.org/10.2139/ssrn.4550829

Aida Y (1995) Characterization and expression of bovine MHC class II genes. Bulletin De La Société Franco-Japonaise des Sciences Vétérinaires 6:17–24

Google Scholar 

Aida Y, Takeshima S, Baldwin CL, Kaushik AK (2015) Bovine immunogenetics. In: Garrick DJ, Ruvinsky A (eds) The genetics of cattle. CABI, Surrey, pp 153–191

Ajmone-Marsan P, Colli L, Ginja C, Kantanen J, Lenstra JA (2023) Genomic characterization of animal genetic resources. FAO Animal Production and Health Guidelines No. 32. Rome: FAO. https://doi.org/10.4060/cc3079en

Ammer H, Schwaiger FW, Kammerbauer C, Gomolka M, Arriens A, Lazary S, Epplen JT (1992) Exonic polymorphism vs intronic simple repeat hypervariability in MHC-DRB genes. Immunogenetics 35(5):332–340. https://doi.org/10.1007/BF00189896

Article  PubMed  Google Scholar 

Baxter R, Craigmile SC, Haley C, Douglas AJ, Williams JL, Glass EJ (2009) BoLA-DR peptide binding pockets are fundamental for foot-and-mouth disease virus vaccine design in cattle. Vaccine 28(1):28–37. https://doi.org/10.1016/j.vaccine.2009.09.131

Article  PubMed  Google Scholar 

Bohorquez MD, Ordoñez D, Suárez CF, Vicente B, Vieira C, López-Abán J, Muro A, Ordóñez I, Patarroyo MA (2020) Major histocompatibility complex class II (DRB3) genetic diversity in Spanish Morucha and Colombian Normande cattle compared to taurine and zebu populations. Front Genet 10:1293. https://doi.org/10.3389/fgene.2019.01293

Article  PubMed  PubMed Central  Google Scholar 

Brown JH, Jardetzky TS, Gorga JC, Stern LJ, Urban RG, Strominger JL, Wiley DC (1993) Three-dimensional structure of the human class II histocompatibility antigen HLA-DR1. Nature 364(6432):33–39. https://doi.org/10.1038/364033a0

Article  PubMed  Google Scholar 

Burke MG, Stone RT, Muggli-Cockett NE (1991) Nucleotide sequence and northern analysis of a bovine major histocompatibility class II DR beta-like cDNA. Anim Genet 22(5):343–352. https://doi.org/10.1111/j.1365-2052.1991.tb00688.x

Article  PubMed  Google Scholar 

Casa MDS, Giovambattista G, Fonteque GV, Miguel EL, Vogel CIG, Miletti LC, Takeshima SN, Fonteque JH (2023) Identification of Anaplasma marginale, Babesia bovis and Babesia bigemina resistance alleles in Crioulo Lageano cattle using PCR-SBT and BoLA-DRB3 gene sequencing. Front Vet Sci 10:1256928. https://doi.org/10.3389/fvets.2023.1256928

Article  PubMed  PubMed Central  Google Scholar 

Cavalli-Sforza LL, Menozzi P, Piazza A (1994) The history and geography of human genes. Princeton University Press

CENCOP (2011) Standard and obligatory identification of Siboney de Cuba breed, Departamento de Calidad, Ministerio de la Agricultura, Cuba. NRAG 239:15. https://www.gaf.minag.cu/uploads/files/repo/8140e63e73895bfa7271dfd00a07a4f9f47fa74a.pdf

Chaudhary Y, Khuntia P, Kaul R (2022) Susceptibility to foot and mouth disease virus infection in vaccinated cattle, and host BoLA A and BoLA DRB3 genes polymorphism. Virusdisease 33(1):65–75. https://doi.org/10.1007/s13337-021-00754-8

Article  PubMed  PubMed Central  Google Scholar 

Crooks GE, Hon G, Chandonia JM, Brenner SE (2004) Weblogo: a sequence logo generator. Genome Res 14:1188–1190. https://doi.org/10.1101/gr.849004

Article  PubMed  PubMed Central  Google Scholar 

De S, Singh RK (2006) Identification of new MHC-DRB3 alleles from Indian (Bos indicus) cattle. Anim Genet 37(6):605–605. https://doi.org/10.1111/j.1365-2052.2006.01539.x

Article  PubMed  Google Scholar 

Excoffier L, Lischer HEL (2010) Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Mol Ecol Resour 10(3):564–567. https://doi.org/10.1111/j.1755-0998.2010.02847.x

Article  PubMed  Google Scholar 

Gelhaus A, Schnittger L, Mehlitz D, Horstmann RD, Meyer CG (1995) Sequence and PCR-RFLP analysis of 14 novel BoLA-DRB3 alleles. Anim Genet 26(3):147–153. https://doi.org/10.1111/j.1365-2052.1995.tb03154.x

Article  PubMed  Google Scholar 

Ginja C, Gama LT, Cortés O et al (2019) The genetic ancestry of American Creole cattle inferred from uniparental and autosomal genetic markers. Sci Rep. https://doi.org/10.1038/s41598-019-47636-0

Article  PubMed  PubMed Central  Google Scholar 

Giovambattista G, Ripoli MV, De Luca JC, Mirol PM, Liron JP, Dulout FN (2000) Male-mediated introgression of Bos indicus genes into Argentine and Bolivian Creole cattle breeds. Anim Genet 31(5):302–305. https://doi.org/10.1046/j.1365-2052.2000.00658.x

Article  PubMed  Google Scholar 

Giovambattista G, Ripoli MV, Peral-Garcia P, Bouzat JL (2001) Indigenous domestic breeds as reservoirs of genetic diversity: the Argentinean creole cattle. Anim Genet 32(5):240–247. https://doi.org/10.1046/j.1365-2052.2001.00774.x

Article  PubMed  Google Scholar 

Giovambattista G, Takeshima SN, Ripoli MV, Matsumoto Y, Franco LA, Saito H, Onuma M, Aida Y (2013) Characterization of bovine MHC DRB3 diversity in Latin American Creole cattle breeds. Gene 519(1):150–158. https://doi.org/10.1016/j.gene.2013.01.002

Article  PubMed  Google Scholar 

Giovambattista G, Moe KK, Polat M, Borjigin L, Hein ST, Moe HH, Takeshima SN, Aida Y (2020) Characterization of bovine MHC DRB3 diversity in global cattle breeds, with a focus on cattle in Myanmar. BMC Genet 21:95. https://doi.org/10.1186/s12863-020-00905-8

Article  PubMed  PubMed Central  Google Scholar 

Giovambattista G, Takeshima SN, Moe KK, Pereira Rico JA, Polat M, Loza Vega A, Arce Cabrera ON, Aida Y (2020) BoLA-DRB3 genetic diversity in Highland Creole cattle from Bolivia. HLA 96(6):688–696. https://doi.org/10.1111/tan.14120

Article  PubMed  Google Scholar 

Goszczynski D, Molina A, Terán E, Morales-Durand H, Ross P, Cheng H, Giovambattista G, Demyda-Peyrás S (2018) Runs of homozygosity in a selected cattle population with extremely inbred bulls: descriptive and functional analyses revealed highly variable patterns. PLoS ONE 13(7):e0200069. https://doi.org/10.1371/journal.pone.0200069

Article  PubMed  PubMed Central  Google Scholar 

Hamada R, Metwally S, Matsuura R, Borjigin L, Lo CW, Ali AO, Mohamed AEA, Wada S, Aida Y (2023) BoLA-DRB3 polymorphism associated with bovine leukemia virus infection and proviral load in Holstein cattle in Egypt. Pathogens 12(12):1451. https://doi.org/10.3390/pathogens12121451

Article  PubMed  PubMed Central  Google Scholar 

Hamada R, Giovambattista G, Metwally S, Borjigin L, Polat Yamanaka M, Matsuura R, Ali AO, Mahmoud HYAH, Mohamed AEA, Kyaw Moe K, Takeshima SN, Wada S, Aida Y (2024) First characterization of major histocompatibility complex class II DRB3 diversity in cattle breeds raised in Egypt. Gene 918:148491. https://doi.org/10.1016/j.gene.2024.148491

Article  PubMed  Google Scholar 

Hammer Ø, Harper DAT, Ryan PD (2001) PAST: paleontological statistics software package for education and data analysis. Palaeontol Electron 4:9

Google Scholar 

Hedrick PW, Whittam TS, Parham P (1991) Heterozygosity at individual amino acid sites: extremely high levels for HLA-A and -B genes. Proc Natl Acad Sci U S A 88(13):5897–5901

Article  PubMed  PubMed Central  Google Scholar 

Hughes AL, Nei M (1989) Nucleotide substitution at major histocompatibility complex class II loci: evidence for overdominant selection. Proc Natl Acad Sci U S A 86(3):958–962

Article  PubMed  PubMed Central  Google Scholar 

Klein J (1986) Natural history of the major histocompatibility complex, 99th edn. John Wiley & Sons Inc. https://catalog.nlm.nih.gov/discovery/fulldisplay/alma996303453406676/01NLM_INST:01NLM_INST

Klein J (1987) Origin of major histocompatibility complex polymorphism- the transspecies hypothesis. Hum Immunol 19:155–162

Article  PubMed  Google Scholar 

Liron JP, Peral-García P, Giovambattista G (2006) Genetic characterization of Argentine and Bolivian Creole cattle breeds assessed through microsatellites. J Hered 97(4):331–339. https://doi.org/10.1093/jhered/esl003

Article  PubMed  Google Scholar 

Lo CW, Takeshima SN, Okada K, Saitou E, Fujita T, Matsumoto Y, Wada S, Inoko H, Aida Y (2021) Association of bovine leukemia virus-induced lymphoma with BoLA-DRB3 polymorphisms at DNA, amino acid, and binding pocket property levels. Pathogens 10(4):437. https://doi.org/10.3390/pathogens10040437

Article  PubMed  PubMed Central  Google Scholar 

Lo CW, Takeshima SN, Wada S, Matsumoto Y, Aida Y (2021) Bovine major histocompatibility complex (BoLA) heterozygote advantage against the outcome of bovine leukemia virus infection. HLA 98(2):132–139. https://doi.org/10.1111/tan.14285

Article  PubMed  Google Scholar 

Maillard JC, Renard C, Chardon P, Chantal I, Bensaid A (1999) Characterization of 18 new BoLA-DRB3 alleles. Anim Genet 30(3):200–203. https://doi.org/10.1046/j.1365-2052.1999.00446.x

Article  PubMed 

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