Agina OA, Rosly MS, Nur Mahiza MI, Ajat M, Zamri-Saad M, Hamzah H (2023) PCR-sequence based typing identified 16 novel bovine leukocyte antigen alleles in crossbred Kedah-Kelantan and Bali cattle, and BoLA-DRB3.2*020:02:01 was associated with resistance to Theileria orientalis infection in crossbred Kedah-Kelantan cattle. SSRN. https://doi.org/10.2139/ssrn.4550829
Aida Y (1995) Characterization and expression of bovine MHC class II genes. Bulletin De La Société Franco-Japonaise des Sciences Vétérinaires 6:17–24
Aida Y, Takeshima S, Baldwin CL, Kaushik AK (2015) Bovine immunogenetics. In: Garrick DJ, Ruvinsky A (eds) The genetics of cattle. CABI, Surrey, pp 153–191
Ajmone-Marsan P, Colli L, Ginja C, Kantanen J, Lenstra JA (2023) Genomic characterization of animal genetic resources. FAO Animal Production and Health Guidelines No. 32. Rome: FAO. https://doi.org/10.4060/cc3079en
Ammer H, Schwaiger FW, Kammerbauer C, Gomolka M, Arriens A, Lazary S, Epplen JT (1992) Exonic polymorphism vs intronic simple repeat hypervariability in MHC-DRB genes. Immunogenetics 35(5):332–340. https://doi.org/10.1007/BF00189896
Baxter R, Craigmile SC, Haley C, Douglas AJ, Williams JL, Glass EJ (2009) BoLA-DR peptide binding pockets are fundamental for foot-and-mouth disease virus vaccine design in cattle. Vaccine 28(1):28–37. https://doi.org/10.1016/j.vaccine.2009.09.131
Bohorquez MD, Ordoñez D, Suárez CF, Vicente B, Vieira C, López-Abán J, Muro A, Ordóñez I, Patarroyo MA (2020) Major histocompatibility complex class II (DRB3) genetic diversity in Spanish Morucha and Colombian Normande cattle compared to taurine and zebu populations. Front Genet 10:1293. https://doi.org/10.3389/fgene.2019.01293
Article PubMed PubMed Central Google Scholar
Brown JH, Jardetzky TS, Gorga JC, Stern LJ, Urban RG, Strominger JL, Wiley DC (1993) Three-dimensional structure of the human class II histocompatibility antigen HLA-DR1. Nature 364(6432):33–39. https://doi.org/10.1038/364033a0
Burke MG, Stone RT, Muggli-Cockett NE (1991) Nucleotide sequence and northern analysis of a bovine major histocompatibility class II DR beta-like cDNA. Anim Genet 22(5):343–352. https://doi.org/10.1111/j.1365-2052.1991.tb00688.x
Casa MDS, Giovambattista G, Fonteque GV, Miguel EL, Vogel CIG, Miletti LC, Takeshima SN, Fonteque JH (2023) Identification of Anaplasma marginale, Babesia bovis and Babesia bigemina resistance alleles in Crioulo Lageano cattle using PCR-SBT and BoLA-DRB3 gene sequencing. Front Vet Sci 10:1256928. https://doi.org/10.3389/fvets.2023.1256928
Article PubMed PubMed Central Google Scholar
Cavalli-Sforza LL, Menozzi P, Piazza A (1994) The history and geography of human genes. Princeton University Press
CENCOP (2011) Standard and obligatory identification of Siboney de Cuba breed, Departamento de Calidad, Ministerio de la Agricultura, Cuba. NRAG 239:15. https://www.gaf.minag.cu/uploads/files/repo/8140e63e73895bfa7271dfd00a07a4f9f47fa74a.pdf
Chaudhary Y, Khuntia P, Kaul R (2022) Susceptibility to foot and mouth disease virus infection in vaccinated cattle, and host BoLA A and BoLA DRB3 genes polymorphism. Virusdisease 33(1):65–75. https://doi.org/10.1007/s13337-021-00754-8
Article PubMed PubMed Central Google Scholar
Crooks GE, Hon G, Chandonia JM, Brenner SE (2004) Weblogo: a sequence logo generator. Genome Res 14:1188–1190. https://doi.org/10.1101/gr.849004
Article PubMed PubMed Central Google Scholar
De S, Singh RK (2006) Identification of new MHC-DRB3 alleles from Indian (Bos indicus) cattle. Anim Genet 37(6):605–605. https://doi.org/10.1111/j.1365-2052.2006.01539.x
Excoffier L, Lischer HEL (2010) Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Mol Ecol Resour 10(3):564–567. https://doi.org/10.1111/j.1755-0998.2010.02847.x
Gelhaus A, Schnittger L, Mehlitz D, Horstmann RD, Meyer CG (1995) Sequence and PCR-RFLP analysis of 14 novel BoLA-DRB3 alleles. Anim Genet 26(3):147–153. https://doi.org/10.1111/j.1365-2052.1995.tb03154.x
Ginja C, Gama LT, Cortés O et al (2019) The genetic ancestry of American Creole cattle inferred from uniparental and autosomal genetic markers. Sci Rep. https://doi.org/10.1038/s41598-019-47636-0
Article PubMed PubMed Central Google Scholar
Giovambattista G, Ripoli MV, De Luca JC, Mirol PM, Liron JP, Dulout FN (2000) Male-mediated introgression of Bos indicus genes into Argentine and Bolivian Creole cattle breeds. Anim Genet 31(5):302–305. https://doi.org/10.1046/j.1365-2052.2000.00658.x
Giovambattista G, Ripoli MV, Peral-Garcia P, Bouzat JL (2001) Indigenous domestic breeds as reservoirs of genetic diversity: the Argentinean creole cattle. Anim Genet 32(5):240–247. https://doi.org/10.1046/j.1365-2052.2001.00774.x
Giovambattista G, Takeshima SN, Ripoli MV, Matsumoto Y, Franco LA, Saito H, Onuma M, Aida Y (2013) Characterization of bovine MHC DRB3 diversity in Latin American Creole cattle breeds. Gene 519(1):150–158. https://doi.org/10.1016/j.gene.2013.01.002
Giovambattista G, Moe KK, Polat M, Borjigin L, Hein ST, Moe HH, Takeshima SN, Aida Y (2020) Characterization of bovine MHC DRB3 diversity in global cattle breeds, with a focus on cattle in Myanmar. BMC Genet 21:95. https://doi.org/10.1186/s12863-020-00905-8
Article PubMed PubMed Central Google Scholar
Giovambattista G, Takeshima SN, Moe KK, Pereira Rico JA, Polat M, Loza Vega A, Arce Cabrera ON, Aida Y (2020) BoLA-DRB3 genetic diversity in Highland Creole cattle from Bolivia. HLA 96(6):688–696. https://doi.org/10.1111/tan.14120
Goszczynski D, Molina A, Terán E, Morales-Durand H, Ross P, Cheng H, Giovambattista G, Demyda-Peyrás S (2018) Runs of homozygosity in a selected cattle population with extremely inbred bulls: descriptive and functional analyses revealed highly variable patterns. PLoS ONE 13(7):e0200069. https://doi.org/10.1371/journal.pone.0200069
Article PubMed PubMed Central Google Scholar
Hamada R, Metwally S, Matsuura R, Borjigin L, Lo CW, Ali AO, Mohamed AEA, Wada S, Aida Y (2023) BoLA-DRB3 polymorphism associated with bovine leukemia virus infection and proviral load in Holstein cattle in Egypt. Pathogens 12(12):1451. https://doi.org/10.3390/pathogens12121451
Article PubMed PubMed Central Google Scholar
Hamada R, Giovambattista G, Metwally S, Borjigin L, Polat Yamanaka M, Matsuura R, Ali AO, Mahmoud HYAH, Mohamed AEA, Kyaw Moe K, Takeshima SN, Wada S, Aida Y (2024) First characterization of major histocompatibility complex class II DRB3 diversity in cattle breeds raised in Egypt. Gene 918:148491. https://doi.org/10.1016/j.gene.2024.148491
Hammer Ø, Harper DAT, Ryan PD (2001) PAST: paleontological statistics software package for education and data analysis. Palaeontol Electron 4:9
Hedrick PW, Whittam TS, Parham P (1991) Heterozygosity at individual amino acid sites: extremely high levels for HLA-A and -B genes. Proc Natl Acad Sci U S A 88(13):5897–5901
Article PubMed PubMed Central Google Scholar
Hughes AL, Nei M (1989) Nucleotide substitution at major histocompatibility complex class II loci: evidence for overdominant selection. Proc Natl Acad Sci U S A 86(3):958–962
Article PubMed PubMed Central Google Scholar
Klein J (1986) Natural history of the major histocompatibility complex, 99th edn. John Wiley & Sons Inc. https://catalog.nlm.nih.gov/discovery/fulldisplay/alma996303453406676/01NLM_INST:01NLM_INST
Klein J (1987) Origin of major histocompatibility complex polymorphism- the transspecies hypothesis. Hum Immunol 19:155–162
Liron JP, Peral-García P, Giovambattista G (2006) Genetic characterization of Argentine and Bolivian Creole cattle breeds assessed through microsatellites. J Hered 97(4):331–339. https://doi.org/10.1093/jhered/esl003
Lo CW, Takeshima SN, Okada K, Saitou E, Fujita T, Matsumoto Y, Wada S, Inoko H, Aida Y (2021) Association of bovine leukemia virus-induced lymphoma with BoLA-DRB3 polymorphisms at DNA, amino acid, and binding pocket property levels. Pathogens 10(4):437. https://doi.org/10.3390/pathogens10040437
Article PubMed PubMed Central Google Scholar
Lo CW, Takeshima SN, Wada S, Matsumoto Y, Aida Y (2021) Bovine major histocompatibility complex (BoLA) heterozygote advantage against the outcome of bovine leukemia virus infection. HLA 98(2):132–139. https://doi.org/10.1111/tan.14285
Maillard JC, Renard C, Chardon P, Chantal I, Bensaid A (1999) Characterization of 18 new BoLA-DRB3 alleles. Anim Genet 30(3):200–203. https://doi.org/10.1046/j.1365-2052.1999.00446.x
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