Seasonality of lake microbial denitrification and its sensitivity to climate warming

Seitzinger, S. et al. Denitrification across landscapes and waterscapes: a synthesis. Ecol. Appl. 16, 2064–2090 (2006).

Article  CAS  PubMed  Google Scholar 

Plummer, P., Tobias, C. & Cady, D. Nitrogen reduction pathways in estuarine sediments: influences of organic carbon and sulfide. J. Geophys. Res. Biogeosci. 120, 1958–1972 (2015).

Article  CAS  Google Scholar 

Zhu, G. et al. Hotspots of anaerobic ammonium oxidation at land–freshwater interfaces. Nat. Geosci. 6, 103–107 (2013).

Article  CAS  Google Scholar 

Lansdown, K. et al. Importance and controls of anaerobic ammonium oxidation influenced by riverbed geology. Nat. Geosci. 9, 357–360 (2016).

Article  CAS  Google Scholar 

Devol, A. H. Denitrification, anammox, and N2 production in marine sediments. Ann. Rev. Mar. Sci. 7, 403–423 (2015).

Article  PubMed  Google Scholar 

Mengis, M., Gächter, R., Wehrli, B. & Bernasconi, S. Nitrogen elimination in two deep eutrophic lakes. Limnol. Oceanogr. 42, 1530–1543 (1997).

Article  CAS  Google Scholar 

Robertson, E. K., Roberts, K. L., Burdorf, L. D. W., Cook, P. & Thamdrup, B. Dissimilatory nitrate reduction to ammonium coupled to Fe(II) oxidation in sediments of a periodically hypoxic estuary. Limnol. Oceanogr. 61, 365–381 (2016).

Article  Google Scholar 

Song, G. D., Liu, S. M., Marchant, H., Kuypers, M. M. M. & Lavik, G. Anammox, denitrification and dissimilatory nitrate reduction to ammonium in the East China Sea sediment. Biogeosciences 10, 6851–6864 (2013).

Article  CAS  Google Scholar 

Palacin-Lizarbe, C. et al. The DNRA–denitrification dichotomy differentiates nitrogen transformation pathways in mountain lake benthic habitats. Front. Microbiol. 10, 1229 (2019).

Kraft, B. et al. The environmental controls that govern the end product of bacterial nitrate respiration. Science 345, 676–679 (2014).

Article  CAS  PubMed  Google Scholar 

Behrendt, A., de Beer, D. & Stief, P. Vertical activity distribution of dissimilatory nitrate reduction in coastal marine sediments. Biogeosciences 10, 7509–7523 (2013).

Article  Google Scholar 

IPCC Climate Change 2021—the Physical Science Basis: Working Group I Contribution to the Sixth Assessment Report of the Intergovernmental Panel on Climate Change. (Cambridge Univ Press, 2023); https://doi.org/10.1017/9781009157896

Velthuis, M. & Veraart, A. J. Temperature sensitivity of freshwater denitrification and N2O emission—a meta-analysis. Glob. Biogeochem. Cycles 36, e2022GB007339 (2022).

Article  CAS  Google Scholar 

Råman Vinnå, L., Medhaug, I., Schmid, M. & Bouffard, D. The vulnerability of lakes to climate change along an altitudinal gradient. Commun. Earth Environ. 2, 2–11 (2021).

Article  Google Scholar 

Woolway, R. I. et al. Phenological shifts in lake stratification under climate change. Nat. Commun. 12, 2318 (2021).

Article  CAS  PubMed  PubMed Central  Google Scholar 

Woolway, R. I. & Merchant, C. J. Worldwide alteration of lake mixing regimes in response to climate change. Nat. Geosci. 12, 271 (2019).

Article  CAS  Google Scholar 

Shatwell, T., Thiery, W. & Kirillin, G. Future projections of temperature and mixing regime of European temperate lakes. Hydrol. Earth Syst. Sci. 23, 1533–1551 (2019).

Article  Google Scholar 

Kalvelage, T. et al. Nitrogen cycling driven by organic matter export in the South Pacific oxygen minimum zone. Nat. Geosci. 6, 228–234 (2013).

Article  CAS  Google Scholar 

Müller, B., Thoma, R., Baumann, K. B. L., Callbeck, C. M. & Schubert, C. J. Nitrogen removal processes in lakes of different trophic states from on-site measurements and historic data. Aquat. Sci. 83, 37 (2021).

Article  PubMed  PubMed Central  Google Scholar 

Song, G. et al. Response of benthic nitrogen cycling to estuarine hypoxia. Limnol. Oceanogr. 66, 652–666 (2021).

Article  CAS  Google Scholar 

Lehmann, M. F. et al. Powering up the “biogeochemical engine”: the impact of exceptional ventilation of a deep meromictic lake on the lacustrine redox, nutrient, and methane balances. Front. Earth Sci. 3, 1–13 (2015).

Article  Google Scholar 

Callbeck, C. M., Ehrenfels, B., Baumann, K. B. L., Wehrli, B. & Schubert, C. J. Anoxic chlorophyll maximum enhances local organic matter remineralization and nitrogen loss in Lake Tanganyika. Nat. Commun. 12, 830 (2021).

Article  CAS  PubMed  PubMed Central  Google Scholar 

Ehrenfels, B. et al. Hydrodynamic regimes modulate nitrogen fixation and the mode of diazotrophy in Lake Tanganyika. Nat. Commun. 14, 6591 (2023).

Article  CAS  PubMed  PubMed Central  Google Scholar 

Klotz, F. et al. Quantification of archaea-driven freshwater nitrification from single cell to ecosystem levels. ISME J. 16, 1647–1656 (2022).

Article  CAS  PubMed  PubMed Central  Google Scholar 

Haas, S. et al. Physical mixing in coastal waters controls and decouples nitrification via biomass dilution. Proc. Natl Acad. Sci. USA 118, e2004877118 (2021).

Article  CAS  PubMed  PubMed Central  Google Scholar 

Nizzoli, D., Carraro, E., Nigro, V. & Viaroli, P. Effect of organic enrichment and thermal regime on denitrification and dissimilatory nitrate reduction to ammonium (DNRA) in hypolimnetic sediments of two lowland lakes. Water Res. 44, 2715–2724 (2010).

Article  CAS  PubMed  Google Scholar 

Dong, L. F., Thornton, D. C. O., Nedwell, D. B. & Underwood, G. J. C. Denitrification in sediments of the River Colne estuary, England. Mar. Ecol. Prog. Ser. 203, 109–122 (2000).

Article  CAS  Google Scholar 

Rysgaard, S., Christensen, P. B. & Nielsen, L. P. Seasonal variation in nitrification and denitrification in estuarine sediment colonized by benthic microalgae and bioturbating infauna. Mar. Ecol. Prog. Ser. 126, 111–121 (1995).

Article  CAS  Google Scholar 

Holmroos, H., Horppila, J., Laakso, S., Niemistö, J. & Hietanen, S. Aeration-induced changes in temperature and nitrogen dynamics in a dimictic lake. J. Environ. Qual. 45, 1359–1366 (2016).

Article  CAS  PubMed  Google Scholar 

Höhener, P. & Gächter, R. Nitrogen cycling across the sediment–water interface in an eutrophic, artificially oxygenated lake. Aquat. Sci. 56, 115–132 (1994).

Article  Google Scholar 

Baumann, K. B. L. et al. Microbial nitrogen transformation potential in sediments of two contrasting lakes is spatially structured but seasonally stable. mSphere 0, e01013–e01021 (2022).

CAS  Google Scholar 

Gächter, R. & Wehrli, B. Ten years of artificial mixing and oxygenation: no effect on the internal phosphorus loading of two eutrophic lakes. Environ. Sci. Technol. 32, 3659–3665 (1998).

Article  Google Scholar 

Baumann, K. B. L. et al. Metagenomic and -transcriptomic analyses of microbial nitrogen transformation potential, and gene expression in Swiss lake sediments. ISME Commun. 4, ycae110 (2024).

Article  PubMed  PubMed Central  Google Scholar 

Bonaglia, S., Nascimento, F. J. A., Bartoli, M., Klawonn, I. & Brüchert, V. Meiofauna increases bacterial denitrification in marine sediments. Nat. Commun. 5, 5133 (2014).

Article  CAS  PubMed  PubMed Central  Google Scholar 

Mctigue, N. D., Gardner, W. S., Dunton, K. H. & Hardison, A. K. Biotic and abiotic controls on co-occurring nitrogen cycling processes in shallow Arctic shelf sediments. Nat. Commun. 7, 13145 (2016).

Article  CAS  PubMed  PubMed Central  Google Scholar 

Stief, P. Stimulation of microbial nitrogen cycling in aquatic ecosystems by benthic macrofauna: mechanisms and environmental implications. Biogeosciences 10, 7829–7846 (2013).

Article  Google Scholar 

Mustakhimov, I., Kalyuzhnaya, M. G., Lidstrom, M. E. & Chistoserdova, L. Insights into denitrification in Methylotenera mobilis from denitrification pathway and methanol metabolism mutants. J. Bacteriol. 195, 2207–2211 (2013).

Article  CAS 

Comments (0)

No login
gif